RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TMED4Q7Z7H5 227 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 LGI3Q8N145 548 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 PBDC1Q9BVG4 233 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 X6R8D5 127 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 ABCA13Q86UQ4 5058 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 A0A0B4J2A0 478 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 RD3LP0DJH9 198 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 PSG1P11464 419 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 EIF2B2P49770 351 aaKnown RBP13.74□□□□□ -0.21
VPS35-202ENST00000561713 CCR6P51684 374 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 ETFRF1Q6IPR1 90 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 MORN3Q6PF18 240 aaPredicted RBP13.74□□□□□ -0.21
VPS35-202ENST00000561713 SIGLEC15Q6ZMC9 328 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 MCFD2Q8NI22 146 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 RAB40CQ96S21 281 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 RSL24D1Q9UHA3 163 aaKnown RBP13.74□□□□□ -0.21
VPS35-202ENST00000561713 SHPKQ9UHJ6 478 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 KCNIP3Q9Y2W7 256 aa13.74□□□□□ -0.21
VPS35-202ENST00000561713 DYNC1H1Q14204 4646 aaKnown RBP13.74□□□□□ -0.21
VPS35-202ENST00000561713 PKD1P98161 4303 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 ELOA3CA0A087WX78 387 aaPredicted RBP13.73□□□□□ -0.21
VPS35-202ENST00000561713 FABP12A6NFH5 140 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 IAPPP10997 89 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 HLA-DMBP28068 263 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 Q6ZTC4 211 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 ZNF767PQ75MW2 155 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 OR1S1Q8NH92 325 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 TRIM63Q969Q1 353 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 RNF125Q96EQ8 232 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 SOSTQ9BQB4 213 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 BCL7BQ9BQE9 202 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 NRN1Q9NPD7 142 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 RABL2AQ9UBK7 228 aaPredicted RBP13.73□□□□□ -0.21
VPS35-202ENST00000561713 CELA1Q9UNI1 258 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 RABL2BQ9UNT1 228 aa13.73□□□□□ -0.21
VPS35-202ENST00000561713 ZNF705EA8MWA4 302 aaPredicted RBP13.72□□□□□ -0.21
VPS35-202ENST00000561713 BUB3O43684 328 aa13.72□□□□□ -0.21
VPS35-202ENST00000561713 ZNF90Q03938 601 aa13.72□□□□□ -0.21
VPS35-202ENST00000561713 KLF9Q13886 244 aaPredicted RBP13.72□□□□□ -0.21
VPS35-202ENST00000561713 TBC1D24Q9ULP9 559 aa13.72□□□□□ -0.21
VPS35-202ENST00000561713 IGKV1D-37A0A075B6S9 117 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 ZFP92A6NM28 416 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 MIFP14174 115 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 LYZP61626 148 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 OR2F1Q13607 317 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 CSNK1G2-AS1Q8NCQ2 148 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 SCGB3A2Q96PL1 93 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 XCL2Q9UBD3 114 aa13.71□□□□□ -0.21
VPS35-202ENST00000561713 PAIP2BQ9ULR5 123 aaKnown RBP13.71□□□□□ -0.21
VPS35-202ENST00000561713 ANXA3P12429 323 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 VAMP1P23763 118 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 FXYD7P58549 80 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 SNRPD3P62318 126 aaKnown RBP13.7□□□□□ -0.22
VPS35-202ENST00000561713 PYDC2Q56P42 97 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 GDF5OSQ5U4N7 250 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 NOXA1Q86UR1 476 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 SLC35E1Q96K37 410 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 WDR12Q9GZL7 423 aaKnown RBP13.7□□□□□ -0.22
VPS35-202ENST00000561713 U3KQ87 197 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 V9GYH0 126 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 DNAH11Q96DT5 4516 aa13.7□□□□□ -0.22
VPS35-202ENST00000561713 A0A1B0GVY2 172 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 C11orf94C9JXX5 98 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 IGKV3-20P01619 116 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 AP2S1P53680 142 aaPredicted RBP13.69□□□□□ -0.22
VPS35-202ENST00000561713 SRPXP78539 464 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 GAMTQ14353 236 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 TMEM41BQ5BJD5 291 aa13.69□□□□□ -0.22
VPS35-202ENST00000561713 H3BMM0 161 aa13.68□□□□□ -0.22
VPS35-202ENST00000561713 ZNF79Q15937 498 aa13.68□□□□□ -0.22
VPS35-202ENST00000561713 LINC00336Q6ZUF6 198 aa13.68□□□□□ -0.22
VPS35-202ENST00000561713 SCRT1Q9BWW7 348 aa13.68□□□□□ -0.22
VPS35-202ENST00000561713 HRH4Q9H3N8 390 aa13.68□□□□□ -0.22
VPS35-202ENST00000561713 HLA-DRB4P13762 266 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 FAUP35544 74 aaKnown RBP13.67□□□□□ -0.22
VPS35-202ENST00000561713 TOMM5Q8N4H5 51 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 LINC00052Q96N35 136 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 MAGT1Q9H0U3 335 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 CACFD1Q9UGQ2 172 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 HLA-DRB4X5D2U9 266 aa13.67□□□□□ -0.22
VPS35-202ENST00000561713 PITX3O75364 302 aa13.66□□□□□ -0.22
VPS35-202ENST00000561713 PPP1R1AQ13522 171 aa13.66□□□□□ -0.22
VPS35-202ENST00000561713 IGHV4-4A0A075B6R2 117 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 IGKV1OR2-108A0A075B7D4 117 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 TRAV10A0A0B4J240 114 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 CCDC160A6NGH7 325 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 H3BP45 60 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 MED14OSP0DP75 135 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 OR8G2PQ6IF36 304 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 PPP1R14BQ96C90 147 aa13.65□□□□□ -0.22
VPS35-202ENST00000561713 IGHV3OR16-12A0A075B7B8 117 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 F6UB75 175 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 SOCS3O14543 225 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 HOXB5P09067 269 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 GPX4P36969 197 aaPredicted RBP13.64□□□□□ -0.23
VPS35-202ENST00000561713 C12orf74Q32Q52 190 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 TMEM128Q5BJH2 165 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 COQ8AQ8NI60 647 aa13.64□□□□□ -0.23
VPS35-202ENST00000561713 DUXBA0A1W2PPF3 345 aa13.63□□□□□ -0.23
VPS35-202ENST00000561713 NUP62P37198 522 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms