RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GGTLC3B5MD39 225 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 M0R1W7 72 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 GATA2P23769 480 aaPredicted RBP9.62□□□□□ -0.87
NUP54-202ENST00000502850 CRYBB3P26998 211 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 RPL15P61313 204 aaKnown RBP9.62□□□□□ -0.87
NUP54-202ENST00000502850 CTAG1AP78358 180 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 ADORA2A-AS1P86434 159 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 TMEM116Q8NCL8 245 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 OR5R1Q8NH85 324 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 TMEM18Q96B42 140 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 TPSG1Q9NRR2 321 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 TNFRSF19Q9NS68 423 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 ZNF355PQ9NSJ1 428 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 AURKAIP1Q9NWT8 199 aaPredicted RBP9.62□□□□□ -0.87
NUP54-202ENST00000502850 CDC42EP3Q9UKI2 254 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 LRRK2Q5S007 2527 aa9.62□□□□□ -0.87
NUP54-202ENST00000502850 PCNX1Q96RV3 2341 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 HIVEP3Q5T1R4 2406 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 IGKV1D-37A0A075B6S9 117 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 ISLRO14498 428 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 SIAH2O43255 324 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 MT-ND6P03923 174 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 COX7A1P24310 79 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 MLANAQ16655 118 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 CLEC12BQ2HXU8 276 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 MRGPRG-AS1Q2M3A8 158 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 PDZD11Q5EBL8 140 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 GFI1BQ5VTD9 330 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 WDR73Q6P4I2 378 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 MISP3Q96FF7 219 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 CHRDL1Q9BU40 450 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 ONECUT1Q9UBC0 465 aa9.61□□□□□ -0.87
NUP54-202ENST00000502850 F11RQ9Y624 299 aaKnown RBP9.61□□□□□ -0.87
NUP54-202ENST00000502850 IGHV3-72A0A0B4J1Y9 119 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 LY6LH3BQJ8 138 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 K7EN84 100 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 GCGP01275 180 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 HTR1DP28221 377 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 SUMO1P63165 101 aaKnown RBP9.6□□□□□ -0.87
NUP54-202ENST00000502850 OR11H6Q8NGC7 330 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 SMIM12Q96EX1 92 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 USP9XQ93008 2570 aaPredicted RBP9.6□□□□□ -0.87
NUP54-202ENST00000502850 SPTBN1Q01082 2364 aaKnown RBP9.6□□□□□ -0.87
NUP54-202ENST00000502850 RELNP78509 3460 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 LYNX1G3V0Z9 82 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 LYNX1P0DP58 116 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 HIST1H1BP16401 226 aaKnown RBP9.6□□□□□ -0.87
NUP54-202ENST00000502850 HNF1AP20823 631 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 GRNP28799 593 aaKnown RBP9.6□□□□□ -0.87
NUP54-202ENST00000502850 LGALS4P56470 323 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 PLP1P60201 277 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 PLGLAQ15195 96 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 TPTE2P1Q5T6R2 138 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 IGF2BP2-AS1Q96M15 143 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 DPM3Q9P2X0 92 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 NAV2Q8IVL1 2488 aa9.6□□□□□ -0.87
NUP54-202ENST00000502850 POLEQ07864 2286 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 USP9YO00507 2555 aaPredicted RBP9.59□□□□□ -0.87
NUP54-202ENST00000502850 OOSP1A8MZH6 123 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 HYPMO75409 117 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 REG1AP05451 166 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 C11orf71Q6IPW1 123 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 CCDC144NLQ6NUI1 221 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 LINC00305Q7Z4B0 112 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 S100A7AQ86SG5 101 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 KIR3DL3Q8N743 410 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 SRSF12Q8WXF0 261 aaKnown RBP9.59□□□□□ -0.87
NUP54-202ENST00000502850 RITA1Q96K30 269 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 SSBP3Q9BWW4 388 aaPredicted RBP9.59□□□□□ -0.87
NUP54-202ENST00000502850 V9GYV3 84 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 PKDREJQ9NTG1 2253 aa9.59□□□□□ -0.87
NUP54-202ENST00000502850 ANKHD1Q8IWZ3 2542 aaKnown RBP9.58□□□□□ -0.88
NUP54-202ENST00000502850 TEX22C9J3V5 150 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 PEX7O00628 323 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 AMBPP02760 352 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 GPR6P46095 362 aaPredicted RBP9.58□□□□□ -0.88
NUP54-202ENST00000502850 JOSD1Q15040 202 aaPredicted RBP9.58□□□□□ -0.88
NUP54-202ENST00000502850 IBA57Q5T440 356 aaKnown RBP9.58□□□□□ -0.88
NUP54-202ENST00000502850 HCP5Q6MZN7 132 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 PATE2Q6UY27 113 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 C1orf122Q6ZSJ8 110 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 FAM231DQ6ZW35 169 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 DTX2Q86UW9 622 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 FXYD5Q96DB9 178 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 GNB1LQ9BYB4 327 aa9.58□□□□□ -0.88
NUP54-202ENST00000502850 LOC105371242A0A075B767 164 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 TRAV5A0A0B4J249 113 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 NBR2O15453 112 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 PRTN3P24158 256 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 SSBP2P81877 361 aaPredicted RBP9.57□□□□□ -0.88
NUP54-202ENST00000502850 ZNF329Q86UD4 541 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 OR1B1Q8NGR6 318 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 ROS1P08922 2347 aa9.57□□□□□ -0.88
NUP54-202ENST00000502850 SPTAN1Q13813 2472 aaKnown RBP9.57□□□□□ -0.88
NUP54-202ENST00000502850 ODF3BA8MYP8 253 aa9.56□□□□□ -0.88
NUP54-202ENST00000502850 LINC00587B1AMM8 73 aa9.56□□□□□ -0.88
NUP54-202ENST00000502850 C22orf46C9J442 243 aa9.56□□□□□ -0.88
NUP54-202ENST00000502850 TSTD3H0UI37 97 aa9.56□□□□□ -0.88
NUP54-202ENST00000502850 SLC17A3O00476 420 aa9.56□□□□□ -0.88
NUP54-202ENST00000502850 CNIH1O95406 144 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms