RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 TRAT1Q6PIZ9 186 aa14.4□□□□□ -0.1
SQSTM1-202ENST00000389805 MRPL27Q9P0M9 148 aaKnown RBP14.4□□□□□ -0.1
SQSTM1-202ENST00000389805 CEP295Q9C0D2 2601 aa14.4□□□□□ -0.1
SQSTM1-202ENST00000389805 SPTA1P02549 2419 aa14.4□□□□□ -0.1
SQSTM1-202ENST00000389805 NABP2Q9BQ15 211 aa14.4□□□□□ -0.1
SQSTM1-202ENST00000389805 RELNP78509 3460 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 MGST3O14880 152 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 GLRXP35754 106 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 ERVK-16P61578 105 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 RHOGP84095 191 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 COX19Q49B96 90 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 IGFL3Q6UXB1 125 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 FAM90A1Q86YD7 464 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 SGK494Q96LW2 274 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 CSTL1Q9H114 145 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 TMEM140Q9NV12 185 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 CORTO00230 105 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 RAB31Q13636 194 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 BVES-AS1Q5T3Y7 98 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 IGF2-ASQ6U949 168 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 SNRNP40Q96DI7 357 aaKnown RBP14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 TMEM70Q9BUB7 260 aa14.39□□□□□ -0.11
SQSTM1-202ENST00000389805 C1orf185Q5T7R7 199 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 ZCCHC24Q8N2G6 241 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 PMCHL2Q9BQD1 86 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 SNAI2O43623 268 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 SAP30O75446 220 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 TMPRSS3P57727 454 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 MLANAQ16655 118 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 FAM169BQ8N8A8 192 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 NUP35Q8NFH5 326 aa14.38□□□□□ -0.11
SQSTM1-202ENST00000389805 A0A087X0K7 114 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 GAGE12BA1L429 117 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 LHBP01229 141 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PSG9Q00887 426 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 MZT1Q08AG7 82 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 IFI27L2Q9H2X8 130 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 SH3BGRL2Q9UJC5 107 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 TPRP12270 2363 aaKnown RBP14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 TRAV5A0A0B4J249 113 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 SAP30LQ9HAJ7 183 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 CALYQ9NYX4 217 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 ARFGEF3Q5TH69 2177 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 TRAV8-6A0A0B4J262 113 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PPOXP50336 477 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PRR20EP86478 221 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PRR20CP86479 221 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PRR20DP86480 221 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PRR20BP86481 221 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 PRR20AP86496 221 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 MEGF9Q9H1U4 602 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 TMEM167BQ9NRX6 74 aa14.37□□□□□ -0.11
SQSTM1-202ENST00000389805 NUDT11Q96G61 164 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 URB1-AS1Q96HZ7 61 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 IGF2BP2-AS1Q96M15 143 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 ZNRD1Q9P1U0 126 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 CFHR2P36980 270 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 C17orf58Q2M2W7 97 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 JPT1Q9UK76 154 aa14.36□□□□□ -0.11
SQSTM1-202ENST00000389805 FOXE3Q13461 319 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 CT45A1Q5HYN5 189 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 MORN5Q5VZ52 161 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 CT45A3Q8NHU0 189 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 CCL13Q99616 98 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 IGLV3-9A0A075B6K5 115 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 IGKV1OR2-108A0A075B7D4 117 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 IGHV1-46P01743 117 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 SLC25A34Q6PIV7 304 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 WFDC8Q8IUA0 241 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 FAM216BQ8N7L0 139 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 PPP1R35Q8TAP8 253 aa14.35□□□□□ -0.11
SQSTM1-202ENST00000389805 HIGD1CA8MV81 97 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 TNFAIP6P98066 277 aaPredicted RBP14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 DEFB125Q8N687 156 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 CORO2AQ92828 525 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 S1PR3Q99500 378 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 ENY2Q9NPA8 101 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 TOX4O94842 621 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 CCL8P80075 99 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 PRSS33Q8NF86 280 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 VWC2LB2RUY7 222 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 TMEM238C9JI98 176 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 F2RL2O00254 374 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 ZNF138P52744 262 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 CR1LQ2VPA4 569 aa14.34□□□□□ -0.11
SQSTM1-202ENST00000389805 CGB3P0DN86 165 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 CGB7P0DN87 165 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 CD40P25942 277 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 SSX8Q7RTT4 187 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 RPH3ALQ9UNE2 315 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 TCF24Q7RTU0 167 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 NAA38Q9BRA0 125 aaKnown RBP14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 RNF7Q9UBF6 113 aa14.33□□□□□ -0.12
SQSTM1-202ENST00000389805 CUL9Q8IWT3 2517 aa14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 SAA2P0DJI9 122 aaPredicted RBP14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 OR9G1Q8NH87 305 aa14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 DYSFO75923 2080 aa14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 DSCAML1Q8TD84 2053 aa14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 SYS1-DBNDD2H3BUS1 97 aa14.32□□□□□ -0.12
SQSTM1-202ENST00000389805 K7ERU9 68 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms