RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SMIM15Q7Z3B0 74 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 TMEM250H0YL14 139 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 KLF17Q5JT82 389 aaPredicted RBP9.32□□□□□ -0.92
VPS4A-201ENST00000254950 BAGE2Q86Y30 109 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 PUSL1Q8N0Z8 303 aaKnown RBP9.32□□□□□ -0.92
VPS4A-201ENST00000254950 C5orf30Q96GV9 206 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 MIR17HGQ75NE6 70 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 PARD6GQ9BYG4 376 aaPredicted RBP9.32□□□□□ -0.92
VPS4A-201ENST00000254950 TPSG1Q9NRR2 321 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 TGOLN2O43493 480 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 GATCO43716 136 aaKnown RBP9.31□□□□□ -0.92
VPS4A-201ENST00000254950 LMO4P61968 165 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 RPEL1Q2QD12 228 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 MBD3L1Q8WWY6 194 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 OR2T8A6NH00 312 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF705GA8MUZ8 300 aaPredicted RBP9.31□□□□□ -0.92
VPS4A-201ENST00000254950 PAFAH1B2P68402 229 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 GUCA2BQ16661 112 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF600Q6ZNG1 722 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 OR10G8Q8NGN5 311 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 MGST2Q99735 147 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 COL27A1Q8IZC6 1860 aaPredicted RBP9.31□□□□□ -0.92
VPS4A-201ENST00000254950 IGHV3-11P01762 117 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 NBEAP1P0C6P0 100 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 OR5I1Q13606 314 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 ODF3L1Q8IXM7 274 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 EIF4E3Q8N5X7 224 aaKnown RBP9.31□□□□□ -0.92
VPS4A-201ENST00000254950 JMJD8Q96S16 334 aa9.31□□□□□ -0.92
VPS4A-201ENST00000254950 FCN1O00602 326 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 GCSAMLQ5JQS6 135 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 ZFP82Q8N141 532 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 Q8N7P7 452 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 LY6G5BQ8NDX9 201 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 DYNLRB2Q8TF09 96 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 RNF125Q96EQ8 232 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 VSIRQ9H7M9 311 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 SH2D7A6NKC9 451 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-201ENST00000254950 HAX1O00165 279 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 SAV1Q9H4B6 383 aaPredicted RBP9.3□□□□□ -0.92
VPS4A-201ENST00000254950 RFNGQ9Y644 331 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 A8MXK9 166 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 HIST1H1EP10412 219 aaKnown RBP9.3□□□□□ -0.92
VPS4A-201ENST00000254950 ARL3P36405 182 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF137PP52743 207 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 C15orf32Q32M92 178 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 RPP25LQ8N5L8 163 aaKnown RBP9.3□□□□□ -0.92
VPS4A-201ENST00000254950 OR4X2Q8NGF9 303 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 TRGV9Q99603 122 aa9.3□□□□□ -0.92
VPS4A-201ENST00000254950 H3BTX0 84 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 PROP1O75360 226 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 RPL35P42766 123 aaKnown RBP9.29□□□□□ -0.92
VPS4A-201ENST00000254950 WT1-ASQ06250 92 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 MLANAQ16655 118 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 TBX15Q96SF7 602 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 CTDSP1Q9GZU7 261 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 ANAPC16Q96DE5 110 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 CRYBB3P26998 211 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 TMEM249Q2WGJ8 235 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 FAM24BQ8N5W8 94 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 AURKAIP1Q9NWT8 199 aaPredicted RBP9.29□□□□□ -0.92
VPS4A-201ENST00000254950 IGHV3OR16-13A0A075B7E8 117 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 IGHV3-74A0A0B4J1X5 117 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 SSTP61278 116 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 FAM209BQ5JX69 171 aa9.29□□□□□ -0.92
VPS4A-201ENST00000254950 IGHV3OR16-8A0A075B7F1 116 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 TRAV1-1A0A0B4J248 108 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 ID1P41134 155 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 WFDC3Q8IUB2 231 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 C16orf92Q96LL3 132 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 BBC3Q96PG8 261 aaPredicted RBP9.28□□□□□ -0.92
VPS4A-201ENST00000254950 SIRPDQ9H106 197 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 PARLQ9H300 379 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 TNCP24821 2201 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 CENPVL3A0A0U1RRI6 287 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 SRP19P09132 144 aaKnown RBP9.28□□□□□ -0.92
VPS4A-201ENST00000254950 ST6GALNAC6Q969X2 333 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF207O43670 478 aaKnown RBP9.28□□□□□ -0.92
VPS4A-201ENST00000254950 PSG1P11464 419 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 CCL20P78556 96 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 PSG9Q00887 426 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 SSX7Q7RTT5 188 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 HAPLN4Q86UW8 402 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 CBLN2Q8IUK8 224 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 DUX5Q96PT3 197 aa9.28□□□□□ -0.92
VPS4A-201ENST00000254950 IGHV3-49A0A0A0MS15 119 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 ATP6V0E1O15342 81 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 CHEK1O14757 476 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 STAG3L2P0CL84 134 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 STAG3L3P0CL85 134 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 TIMM8BQ9Y5J9 83 aaPredicted RBP9.27□□□□□ -0.93
VPS4A-201ENST00000254950 DOPEY1Q5JWR5 2465 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 USP9YO00507 2555 aaPredicted RBP9.27□□□□□ -0.93
VPS4A-201ENST00000254950 HLA-DRB1P01911 266 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 S100A8P05109 93 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 UTF1Q5T230 341 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 FAM110DQ8TAY7 271 aaPredicted RBP9.27□□□□□ -0.93
VPS4A-201ENST00000254950 ISOC2Q96AB3 205 aa9.27□□□□□ -0.93
VPS4A-201ENST00000254950 PRNTQ86SH4 94 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 C5orf17Q8NAS9 161 aa9.26□□□□□ -0.93
VPS4A-201ENST00000254950 FAM74A7A6NL05 159 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms