RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ZNF404Q494X3 552 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CENPWQ5EE01 88 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 DNAJC24Q6P3W2 148 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 AGTRAPQ6RW13 159 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 ARL9Q6T311 187 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 PLET1Q6UQ28 207 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 ZNF493Q6ZR52 646 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 H2AFVQ71UI9 128 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 SLC25A45Q8N413 288 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 LINC00337Q8N6G1 96 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR8S1Q8NH09 359 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR5W2Q8NH69 310 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR10G6Q8NH81 332 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR5K1Q8NHB7 308 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CT55Q8WUE5 264 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 DCAKDQ8WVC6 231 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 PTX4Q96A99 478 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 APOBEC3DQ96AK3 386 aaPredicted RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 SLC25A44Q96H78 314 aaPredicted RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 TSPAN32Q96QS1 320 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR7D2Q96RA2 312 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM243Q9BU79 118 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM70Q9BUB7 260 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM147Q9BVK8 224 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 MND1Q9BWT6 205 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 MRPL20Q9BYC9 149 aaKnown RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 CHST6Q9GZX3 395 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM126AQ9H061 195 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM222Q9H0R3 208 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 UQCC1Q9NVA1 299 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 COA4Q9NYJ1 87 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 RBM12B-AS1Q9P1G2 102 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 HSPB8Q9UJY1 196 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 POMPQ9Y244 141 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 KLF13Q9Y2Y9 288 aaPredicted RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 INSIG2Q9Y5U4 225 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 RFNGQ9Y644 331 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 ENPP4Q9Y6X5 453 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CCDC168Q8NDH2 2452 aa1.84□□□□□ -2.12
VPS41-213ENST00000485955 ROBO3Q96MS0 1386 aa1.84□□□□□ -2.12
VPS41-213ENST00000485955 CDK5RAP2Q96SN8 1893 aa1.84□□□□□ -2.12
VPS41-213ENST00000485955 SHANK1Q9Y566 2161 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 SPEF2Q9C093 1822 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 TRAV36DV7A0A075B6V5 113 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 A0A096LPI6 279 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 TRAV40A0A0B4J280 105 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 CIB4A0PJX0 185 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 TMEM189A5PLL7 270 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 C5orf63A6NC05 138 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 SIGLEC16A6NMB1 481 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ZNF705GA8MUZ8 300 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 TNFSF15O95150 251 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 NDUFC2O95298 119 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 GYPCP04921 128 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 S100A8P05109 93 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 CSN2P05814 226 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 DBIP07108 87 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 LGALS1P09382 135 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 CECR9P0C854 216 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 MPC1LP0DKB6 136 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ZNF30P17039 623 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ORM2P19652 201 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 EMP1P54849 157 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 PIGPP57054 158 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 SYNJ2BPP57105 145 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 DEFA1P59665 94 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 GNG2P59768 71 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 RRAS2P62070 204 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 IFITM3Q01628 133 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 MEF2CQ06413 473 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 BAMBIQ13145 260 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 BTN1A1Q13410 526 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 JOSD1Q15040 202 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 GRK1Q15835 563 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 KCNJ8Q15842 424 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 LTC4SQ16873 150 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 COA6Q5JTJ3 125 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 CLLU1OSQ5K130 101 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 IBA57Q5T440 356 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 GLYATQ6IB77 296 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ZNF880Q6PDB4 577 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 Q6ZRU5 148 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 Q6ZSR6 202 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ATP5L2Q7Z4Y8 100 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 MDP1Q86V88 176 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ZIC4Q8N9L1 334 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 OR52P1PQ8NH57 321 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ZNF675Q8TD23 568 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 THEM6Q8WUY1 208 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 CANT1Q8WVQ1 401 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 MBD3L1Q8WWY6 194 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 KLK6Q92876 244 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 PLEKHB2Q96CS7 222 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 PDXPQ96GD0 296 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 GPR82Q96P67 336 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 LYSMD1Q96S90 227 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 SLC25A2Q9BXI2 301 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 EIF5A2Q9GZV4 153 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 HMG20AQ9NP66 347 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms