RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 S100A11P31949 105 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 SLURP1P55000 103 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 WT1-ASQ06250 92 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 EXOSC2Q13868 293 aaKnown RBP7.21□□□□□ -1.26
LDLR-211ENST00000560173 TMEM187Q14656 261 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 IZUMO4Q1ZYL8 232 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 ANKRD55Q3KP44 614 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 LGALSLQ3ZCW2 172 aaPredicted RBP7.21□□□□□ -1.26
LDLR-211ENST00000560173 LAMTOR1Q6IAA8 161 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 ZNF343Q6P1L6 599 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 ACOT7LQ6ZUV0 252 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 OR11H4Q8NGC9 324 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 OR10W1Q8NGF6 305 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 OR5B3Q8NH48 314 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 TMEM56Q96MV1 263 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 FANCD2OSQ96PS1 177 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 GPR61Q9BZJ8 451 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 MFFQ9GZY8 342 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 NDUFA4L2Q9NRX3 87 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 FKBP11Q9NYL4 201 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 TMEM56-RWDD3S4R434 201 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 IGLV11-55A0A075B6I3 123 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 ANKRD34BA5PLL1 514 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 G3V3Q6 166 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 ARPC5O15511 151 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 OR2J3O76001 311 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 NDUFB8O95169 186 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 MPC2O95563 127 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 TRBV12-3P01733 135 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 OR13C7P0DN81 318 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 SLC25A6P12236 298 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 HIST1H1BP16401 226 aaKnown RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 HOXD3P31249 432 aaPredicted RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 AKR1C2P52895 323 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 EIF5AP63241 154 aaKnown RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 ATP5G2Q06055 141 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 OPCMLQ14982 345 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 IAH1Q2TAA2 248 aaPredicted RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 C15orf32Q32M92 178 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 PRSS54Q6PEW0 395 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 HSD17B13Q7Z5P4 300 aaPredicted RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 OR4A16Q8NH70 328 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 LHFPL5Q8TAF8 219 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 GLYATL2Q8WU03 294 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 DCUN1D4Q92564 292 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 DLX4Q92988 240 aaPredicted RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 LSM10Q969L4 123 aaKnown RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 WDR89Q96FK6 387 aaPredicted RBP7.2□□□□□ -1.26
LDLR-211ENST00000560173 HINT2Q9BX68 163 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 FBXL7Q9UJT9 491 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 DMRT1Q9Y5R6 373 aa7.2□□□□□ -1.26
LDLR-211ENST00000560173 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.19□□□□□ -1.26
LDLR-211ENST00000560173 A0A0G2JRQ6 117 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 KANTRA0A1W2PQU2 76 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 SEC14L6B5MCN3 397 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 CCSO14618 274 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 OVOL1O14753 267 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 HOXB5P09067 269 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 LYL1P12980 280 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 PVALBP20472 110 aaPredicted RBP7.19□□□□□ -1.26
LDLR-211ENST00000560173 ZP3P21754 424 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 RAB14P61106 215 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 PRCDQ00LT1 54 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 IFITM2Q01629 132 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 EGFEM1PQ0D2K5 195 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 GGNBP1Q5YKI7 109 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 TMUB2Q71RG4 321 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 SLC51BQ86UW2 128 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 ZNF429Q86V71 674 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 SELENOHQ8IZQ5 122 aaKnown RBP7.19□□□□□ -1.26
LDLR-211ENST00000560173 KCNRGQ8N5I3 272 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 RBPMSQ93062 196 aaKnown RBP7.19□□□□□ -1.26
LDLR-211ENST00000560173 ARL6Q9H0F7 186 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 PEF1Q9UBV8 284 aaKnown RBP7.19□□□□□ -1.26
LDLR-211ENST00000560173 CACFD1Q9UGQ2 172 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 TNFSF18Q9UNG2 199 aa7.19□□□□□ -1.26
LDLR-211ENST00000560173 TRAV14DV4A0A0A6YYC5 116 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 BMPR1BO00238 502 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 TAAR5O14804 337 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 TSC22D2O75157 780 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 ADAP1O75689 374 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 PRB2P02812 416 aaPredicted RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 DEFA4P12838 97 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 AP2S1P53680 142 aaPredicted RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 MFAP2P55001 183 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 KRTAP10-11P60412 298 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 HSPE1P61604 102 aaKnown RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 AARDQ4LEZ3 155 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 FAM209BQ5JX69 171 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 C9orf66Q5T8R8 295 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 TMEM268Q5VZI3 342 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 TEX261Q6UWH6 196 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 Q6ZRM9 215 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 FAM219AQ8IW50 185 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 RNASE11Q8TAA1 199 aaKnown RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 RRNAD1Q96FB5 475 aaKnown RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 PRR13Q9NZ81 148 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 GSKIPQ9P0R6 139 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 UBQLN2Q9UHD9 624 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 BOLA1Q9Y3E2 137 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms