RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TMEM167AQ8TBQ9 72 aa17.64■□□□□ 0.42
SHMT1-202ENST00000352886 ST6GALNAC6Q969X2 333 aa17.64■□□□□ 0.42
SHMT1-202ENST00000352886 TECRQ9NZ01 308 aaKnown RBP17.64■□□□□ 0.42
SHMT1-202ENST00000352886 K7ENP7 123 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 DLL1O00548 723 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 DLX6P56179 175 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 PRSS8Q16651 343 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 C8orf31Q8N9H6 132 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 ACY3Q96HD9 319 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 SCNM1Q9BWG6 230 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 PRDM13Q9H4Q3 707 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 TMEM167BQ9NRX6 74 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 KAAG1Q9UBP8 84 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 WASHC3Q9Y3C0 194 aa17.64■□□□□ 0.41
SHMT1-202ENST00000352886 K7EN84 100 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 RBPJQ06330 500 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 COA6Q5JTJ3 125 aaKnown RBP17.63■□□□□ 0.41
SHMT1-202ENST00000352886 C10orf55Q5SWW7 151 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 OR10G8Q8NGN5 311 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 OR2T6Q8NHC8 308 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 ZNF503Q96F45 646 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 NAV3Q8IVL0 2385 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 OR7C2O60412 319 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 AREGP15514 252 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 TMEM155Q4W5P6 130 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 TGIF2LXQ8IUE1 241 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 OR4A5Q8NH83 315 aa17.63■□□□□ 0.41
SHMT1-202ENST00000352886 IGHV1-69-2A0A0G2JMI3 117 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 IGLV2-23P01705 113 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 OR5G3P0C626 314 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 FAM87AP0C7U9 286 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 WT1-ASQ06250 92 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 CACNG8Q8WXS5 425 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 ZNF430Q9H8G1 570 aaPredicted RBP17.62■□□□□ 0.41
SHMT1-202ENST00000352886 A0A1W2PN81 502 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 CGB1A6NKQ9 187 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 INS-IGF2F8WCM5 200 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 AMBPP02760 352 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 PQLC2Q6ZP29 291 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 BTF3L4Q96K17 158 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 CHODLQ9H9P2 273 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 ARL2-SNX15V9GYD0 113 aa17.62■□□□□ 0.41
SHMT1-202ENST00000352886 C9JCJ5 164 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 IGHV1-8P0DP01 117 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 HIST1H1BP16401 226 aaKnown RBP17.61■□□□□ 0.41
SHMT1-202ENST00000352886 RPL15P61313 204 aaKnown RBP17.61■□□□□ 0.41
SHMT1-202ENST00000352886 HLA-DRB5Q30154 266 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 C19orf24Q9BVV8 132 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 TRAPPC1Q9Y5R8 145 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 PLXNB1O43157 2135 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 A0A087X0M5 115 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 A0A1B0GX30 115 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 OR10J4P0C629 311 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 APOBEC3AP31941 199 aaPredicted RBP17.61■□□□□ 0.41
SHMT1-202ENST00000352886 PDLIM4P50479 330 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 ZNF137PP52743 207 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 TAS2R45P59539 299 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 PNKDQ8N490 385 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 VKORC1Q9BQB6 163 aa17.61■□□□□ 0.41
SHMT1-202ENST00000352886 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-202ENST00000352886 EAF1Q96JC9 268 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-202ENST00000352886 CEP295Q9C0D2 2601 aa17.6■□□□□ 0.41
SHMT1-202ENST00000352886 SLC25A17O43808 307 aa17.6■□□□□ 0.41
SHMT1-202ENST00000352886 CRYBB3P26998 211 aa17.6■□□□□ 0.41
SHMT1-202ENST00000352886 REC114Q7Z4M0 266 aa17.6■□□□□ 0.41
SHMT1-202ENST00000352886 SSBP2P81877 361 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-202ENST00000352886 C11orf42Q8N5U0 333 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 RITA1Q96K30 269 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 SLC25A33Q9BSK2 321 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 FNDC4Q9H6D8 234 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-202ENST00000352886 TPSG1Q9NRR2 321 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 PTPRQQ9UMZ3 2332 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 TLN1Q9Y490 2541 aaKnown RBP17.59■□□□□ 0.41
SHMT1-202ENST00000352886 PLAUP00749 431 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 CD3EP07766 207 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 CNN1P51911 297 aaKnown RBP17.59■□□□□ 0.41
SHMT1-202ENST00000352886 TAS2R60P59551 318 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 LY96Q9Y6Y9 160 aa17.59■□□□□ 0.41
SHMT1-202ENST00000352886 IGHV3-72A0A0B4J1Y9 119 aa17.58■□□□□ 0.41
SHMT1-202ENST00000352886 SLC17A3O00476 420 aa17.58■□□□□ 0.41
SHMT1-202ENST00000352886 C8orf88P0DMB2 117 aa17.58■□□□□ 0.41
SHMT1-202ENST00000352886 VMA21Q3ZAQ7 101 aa17.58■□□□□ 0.41
SHMT1-202ENST00000352886 TMEM133Q9H2Q1 129 aa17.58■□□□□ 0.41
SHMT1-202ENST00000352886 HELTA6NFD8 242 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 B9A039 149 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 ENSAO43768 121 aaKnown RBP17.58■□□□□ 0.4
SHMT1-202ENST00000352886 IGHV3-48P01763 117 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 MC5RP33032 325 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 CENPWQ5EE01 88 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 MORN5Q5VZ52 161 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 UNQ6494/PRO21346Q6UXR6 183 aa17.58■□□□□ 0.4
SHMT1-202ENST00000352886 RNASEH2CQ8TDP1 164 aaKnown RBP17.58■□□□□ 0.4
SHMT1-202ENST00000352886 PSMB11A5LHX3 300 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 GGTLC3B5MD39 225 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 GNG4P50150 75 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 SUB1P53999 127 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHMT1-202ENST00000352886 DLX1P56177 255 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 ZNF90Q03938 601 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 DNLZQ5SXM8 178 aa17.57■□□□□ 0.4
SHMT1-202ENST00000352886 IL36BQ9NZH7 164 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms