RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZNF503Q96F45 646 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 LGALS4P56470 323 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 TMEM177Q53S58 311 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 WFDC8Q8IUA0 241 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 MMD2Q8IY49 270 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 OR9G1Q8NH87 305 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 RELNP78509 3460 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 INS-IGF2F8WCM5 200 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 C8orf88P0DMB2 117 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 CCL3L1P16619 93 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 USF1P22415 310 aaPredicted RBP13.34□□□□□ -0.27
HOXD3-201ENST00000249440 CBLN1P23435 193 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 RPL19P84098 196 aaKnown RBP13.34□□□□□ -0.27
HOXD3-201ENST00000249440 OR5I1Q13606 314 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 OR4C13Q8NGP0 309 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 WFIKKN1Q96NZ8 548 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 SLC25A33Q9BSK2 321 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 MRPL18Q9H0U6 180 aaKnown RBP13.34□□□□□ -0.27
HOXD3-201ENST00000249440 SAP30LQ9HAJ7 183 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 V9GYV3 84 aa13.34□□□□□ -0.27
HOXD3-201ENST00000249440 PTPRQQ9UMZ3 2332 aa13.33□□□□□ -0.27
HOXD3-201ENST00000249440 PPIAL4EA0A075B759 164 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 A0A1W2PRE2 83 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 PPIAL4DF5H284 164 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 PRRG2O14669 202 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 KLK10O43240 276 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 OR10J4P0C629 311 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 PPIAL4FP0DN26 164 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 CHRNB4P30926 498 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 ITPR1Q14643 2758 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 TIGITQ495A1 244 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 TMEM200BQ69YZ2 307 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 ZCCHC24Q8N2G6 241 aaKnown RBP13.33□□□□□ -0.28
HOXD3-201ENST00000249440 VSTM2AQ8TAG5 236 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 RNF2Q99496 336 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 MRPL32Q9BYC8 188 aaKnown RBP13.33□□□□□ -0.28
HOXD3-201ENST00000249440 PPIAL4AQ9Y536 164 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 A0A0G2JNJ9 132 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 A0A1B0GUS0 222 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 A0A1W2PN81 502 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 DPRXA6NFQ7 191 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 SCGB1D1O95968 90 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 LBHQ53QV2 105 aaPredicted RBP13.33□□□□□ -0.28
HOXD3-201ENST00000249440 OR1L6Q8NGR2 347 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 OR10X1Q8NGY0 326 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 OR4A5Q8NH83 315 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 CMTM2Q8TAZ6 248 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 MS4A10Q96PG2 267 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 Q9UFV3 132 aa13.33□□□□□ -0.28
HOXD3-201ENST00000249440 ZGRF1Q86YA3 2104 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 TRBV9A0A0B4J1U6 114 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 GRIFINA4D1Z8 144 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 FCN1O00602 326 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 NUPR1O60356 82 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 CRISP2P16562 243 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 SUMO1P63165 101 aaKnown RBP13.32□□□□□ -0.28
HOXD3-201ENST00000249440 DOLPP1Q86YN1 238 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 TMEM186Q96B77 213 aa13.32□□□□□ -0.28
HOXD3-201ENST00000249440 GGTLC3B5MD39 225 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 TMEM178BH3BS89 294 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 REG1BP48304 166 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 BSPH1Q075Z2 132 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 FAM71F2Q6NXP2 309 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 PDPNQ86YL7 162 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 BEND2Q8NDZ0 799 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 TMEM167AQ8TBQ9 72 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 NDUFAF3Q9BU61 184 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 ROS1P08922 2347 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 NDUFB3O43676 98 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 IER3P46695 156 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 PAFAH1B2P68402 229 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 SSX2Q16385 188 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 OR8I2Q8N0Y5 310 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 OR2T6Q8NHC8 308 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 H1FXQ92522 213 aaKnown RBP13.31□□□□□ -0.28
HOXD3-201ENST00000249440 DNAJC4Q9NNZ3 241 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 OSTCQ9NRP0 149 aa13.31□□□□□ -0.28
HOXD3-201ENST00000249440 SNURFLB1AK76 121 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 SUB1P53999 127 aaKnown RBP eCLIP13.3□□□□□ -0.28
HOXD3-201ENST00000249440 RAB4BP61018 213 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 LRRC10Q5BKY1 277 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 ZNF600Q6ZNG1 722 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 CCL17Q92583 94 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 GNB1LQ9BYB4 327 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 VSTM5A8MXK1 200 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 ISLRO14498 428 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 TPPP2P59282 170 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 SSX8Q7RTT4 187 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 C8orf31Q8N9H6 132 aa13.3□□□□□ -0.28
HOXD3-201ENST00000249440 PSMB11A5LHX3 300 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 E7EUB6 86 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 FCN3O75636 299 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 ESDP10768 282 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 PPOXP50336 477 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 RANP62826 216 aaKnown RBP13.29□□□□□ -0.28
HOXD3-201ENST00000249440 CX3CL1P78423 397 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 LINC00311Q8N616 119 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 RNASE7Q9H1E1 156 aaKnown RBP13.29□□□□□ -0.28
HOXD3-201ENST00000249440 NAGKQ9UJ70 344 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 MT-ND6P03923 174 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms