RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAUP35544 74 aaKnown RBP12.29□□□□□ -0.44
TRIM28-213ENST00000598355 AKR1C2P52895 323 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 HSPE1P61604 102 aaKnown RBP12.29□□□□□ -0.44
TRIM28-213ENST00000598355 IZUMO4Q1ZYL8 232 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 SPANXN2Q5MJ10 180 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 FAM219AQ8IW50 185 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 OR2C3Q8N628 320 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 OR4A16Q8NH70 328 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 VN1R17PQ8TDU5 208 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 OR4C12Q96R67 309 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 PRR25Q96S07 402 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 THYN1Q9P016 225 aa12.29□□□□□ -0.44
TRIM28-213ENST00000598355 TEX13DA0A0J9YY54 714 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-213ENST00000598355 PPP5D1E7EU14 171 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 LGALS9O00182 355 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 GGCTO75223 188 aaKnown RBP12.28□□□□□ -0.44
TRIM28-213ENST00000598355 SPNP16150 400 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 MECP2P51608 486 aaKnown RBP12.28□□□□□ -0.44
TRIM28-213ENST00000598355 DHODHQ02127 395 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 TRIM16LQ309B1 348 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 GPHB5Q86YW7 130 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 TOMM5Q8N4H5 51 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 OR1L6Q8NGR2 347 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 OR1P1Q8NH06 330 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 RBPMSQ93062 196 aaKnown RBP12.28□□□□□ -0.44
TRIM28-213ENST00000598355 SCGB3A2Q96PL1 93 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 HINT2Q9BX68 163 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 MCUBQ9NWR8 336 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 S4R3C0 116 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 TMEM56-RWDD3S4R434 201 aa12.28□□□□□ -0.44
TRIM28-213ENST00000598355 A8MWP6 167 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 F8W735 103 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-213ENST00000598355 K7EIM0 57 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 CYB5BO43169 146 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 ARL3P36405 182 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 SUPT4H1P63272 117 aaKnown RBP12.27□□□□□ -0.45
TRIM28-213ENST00000598355 TMEM187Q14656 261 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 TATDN3Q17R31 274 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 PVRIGQ6DKI7 326 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 CLEC19AQ6UXS0 136 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 ADAMTSL5Q6ZMM2 481 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 IL22RA2Q969J5 263 aa12.27□□□□□ -0.45
TRIM28-213ENST00000598355 SDHCQ99643 169 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-213ENST00000598355 ST8SIA3O43173 380 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 IGHV3-23P01764 117 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 Q6ZRM9 215 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 SELENOHQ8IZQ5 122 aaKnown RBP12.26□□□□□ -0.45
TRIM28-213ENST00000598355 B9D2Q9BPU9 175 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 PEMTQ9UBM1 199 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 DNAH9Q9NYC9 4486 aa12.26□□□□□ -0.45
TRIM28-213ENST00000598355 HLA-AP01891 365 aaKnown RBP12.25□□□□□ -0.45
TRIM28-213ENST00000598355 GP9P14770 177 aa12.25□□□□□ -0.45
TRIM28-213ENST00000598355 FCGR2BP31994 310 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-213ENST00000598355 HAPLN4Q86UW8 402 aa12.25□□□□□ -0.45
TRIM28-213ENST00000598355 SGPP2Q8IWX5 399 aa12.25□□□□□ -0.45
TRIM28-213ENST00000598355 RRNAD1Q96FB5 475 aaKnown RBP12.25□□□□□ -0.45
TRIM28-213ENST00000598355 PLEKHA3Q9HB20 300 aa12.25□□□□□ -0.45
TRIM28-213ENST00000598355 I3L2K1 104 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 TGOLN2O43493 480 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 OR2C1O95371 312 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 CLEC3BP05452 202 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 GPR183P32249 361 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 BAK1Q16611 211 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 BSXQ3C1V8 233 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 TMEM268Q5VZI3 342 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 SLC25A24Q6NUK1 477 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 OR2K2Q8NGT1 345 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 OR52E5Q8NH55 327 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 SCARB1Q8WTV0 552 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 BSCL2Q96G97 398 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-213ENST00000598355 ZNF414Q96IQ9 312 aa12.24□□□□□ -0.45
TRIM28-213ENST00000598355 SLC25A21Q9BQT8 299 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-213ENST00000598355 ZNF436Q9C0F3 470 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-213ENST00000598355 TMEM213A2RRL7 107 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 C2orf70A6NJV1 201 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 NMSQ5H8A3 153 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 SPSB3Q6PJ21 355 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 SLC35G3Q8N808 338 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 C21orf62Q9NYP8 219 aa12.23□□□□□ -0.45
TRIM28-213ENST00000598355 A0A0B4J2A0 478 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 RNASE2P10153 161 aaKnown RBP12.22□□□□□ -0.45
TRIM28-213ENST00000598355 ERHP84090 104 aaKnown RBP12.22□□□□□ -0.45
TRIM28-213ENST00000598355 TMEM128Q5BJH2 165 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 DEFB121Q5J5C9 76 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 UNQ9165/PRO28630Q6UXU0 137 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 GPR146Q96CH1 333 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 ZC4H2Q9NQZ6 224 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 CACNG5Q9UF02 275 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 SHPKQ9UHJ6 478 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 KCNIP3Q9Y2W7 256 aa12.22□□□□□ -0.45
TRIM28-213ENST00000598355 LY86O95711 162 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 IFNA17P01571 189 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 AKR1C4P17516 323 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 EDN2P20800 178 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 BTCP35070 178 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 ADMP35318 185 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 ELLP55199 621 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-213ENST00000598355 SPCS3P61009 180 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 SRPXP78539 464 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 RBMS2Q15434 407 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms