RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GATA2P23769 480 aaPredicted RBP16.31■□□□□ 0.2
VPS53-201ENST00000291074 OR5B12Q96R08 314 aa16.31■□□□□ 0.2
VPS53-201ENST00000291074 A0A1W2PPQ1 181 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 E7EUB6 86 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 LINC00869P0C866 280 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 GCHFRP30047 84 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 RPL29P47914 159 aaKnown RBP16.3■□□□□ 0.2
VPS53-201ENST00000291074 PRR20EP86478 221 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 PRR20CP86479 221 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 PRR20DP86480 221 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 PRR20BP86481 221 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 PRR20AP86496 221 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 CDPF1Q6NVV7 123 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 PCGF1Q9BSM1 259 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 TRBV20OR9-2A0A075B6H5 130 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 RAB31Q13636 194 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 OR5AN1Q8NGI8 311 aa16.3■□□□□ 0.2
VPS53-201ENST00000291074 OSR1Q8TAX0 266 aaPredicted RBP16.3■□□□□ 0.2
VPS53-201ENST00000291074 VSTM5A8MXK1 200 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 VENTXO95231 258 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 C1QTNF9P0C862 333 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 RNASE2P10153 161 aaKnown RBP16.29■□□□□ 0.2
VPS53-201ENST00000291074 DLX1P56177 255 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 RHOBP62745 196 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 MIR17HGQ75NE6 70 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 OR4P4Q8NGL7 312 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 PYGO2Q9BRQ0 406 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 GPR61Q9BZJ8 451 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 DCHS2Q6V1P9 2916 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.29■□□□□ 0.2
VPS53-201ENST00000291074 GATCO43716 136 aaKnown RBP16.29■□□□□ 0.2
VPS53-201ENST00000291074 PRB3Q04118 309 aaPredicted RBP16.29■□□□□ 0.2
VPS53-201ENST00000291074 RBPJQ06330 500 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 C10orf55Q5SWW7 151 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 OR4X1Q8NH49 305 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 NGBQ9NPG2 151 aa16.29■□□□□ 0.2
VPS53-201ENST00000291074 LYNX1G3V0Z9 82 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 LYNX1P0DP58 116 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 HNF1AP20823 631 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 FAM78BQ5VT40 261 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 OR5B3Q8NH48 314 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 LINC01560Q8TB33 94 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 FLYWCH2Q96CP2 140 aaKnown RBP16.28■□□□□ 0.2
VPS53-201ENST00000291074 NABP2Q9BQ15 211 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 ABCA4P78363 2273 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 TACC2O95359 2948 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 F6UZH7 168 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 GAMTQ14353 236 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 OR9G1Q8NH87 305 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 ANAPC16Q96DE5 110 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 COMMD5Q9GZQ3 224 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 SRD5A3Q9H8P0 318 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 SLC45A2Q9UMX9 530 aa16.28■□□□□ 0.2
VPS53-201ENST00000291074 DLX6P56179 175 aa16.27■□□□□ 0.2
VPS53-201ENST00000291074 TMEM177Q53S58 311 aa16.27■□□□□ 0.2
VPS53-201ENST00000291074 PFDN5Q99471 154 aa16.27■□□□□ 0.2
VPS53-201ENST00000291074 ANKHD1Q8IWZ3 2542 aaKnown RBP16.27■□□□□ 0.2
VPS53-201ENST00000291074 ZZEF1O43149 2961 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 PPP1R2P9O14990 202 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 GRNP28799 593 aaKnown RBP16.27■□□□□ 0.19
VPS53-201ENST00000291074 OR10J1P30954 320 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 RPL8P62917 257 aaKnown RBP16.27■□□□□ 0.19
VPS53-201ENST00000291074 C2orf83Q53S99 150 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 HIST3H2BBQ8N257 126 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 VKORC1Q9BQB6 163 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 FKBP11Q9NYL4 201 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 ATRXP46100 2492 aa16.27■□□□□ 0.19
VPS53-201ENST00000291074 IGHV1-69-2A0A0G2JMI3 117 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 FAM90A27PA6NNH2 459 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 TGOLN2O43493 480 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 GPX4P36969 197 aaPredicted RBP16.26■□□□□ 0.19
VPS53-201ENST00000291074 SSX8Q7RTT4 187 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 TMEM144Q7Z5S9 345 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 NDUFA4L2Q9NRX3 87 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 GAR1Q9NY12 217 aaKnown RBP16.26■□□□□ 0.19
VPS53-201ENST00000291074 FAM3BP58499 235 aaPredicted RBP16.26■□□□□ 0.19
VPS53-201ENST00000291074 ST6GALNAC6Q969X2 333 aa16.26■□□□□ 0.19
VPS53-201ENST00000291074 FNDC10F2Z333 226 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 TMEM155Q4W5P6 130 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 RITA1Q96K30 269 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 TPSG1Q9NRR2 321 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 MALRD1Q5VYJ5 2156 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 IGHV3-72A0A0B4J1Y9 119 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 PPP5D1E7EU14 171 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 CD3EP07766 207 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 S100A2P29034 98 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 APOBEC3AP31941 199 aaPredicted RBP16.25■□□□□ 0.19
VPS53-201ENST00000291074 PYY3Q5JQD4 70 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 OR4C13Q8NGP0 309 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 OR1L8Q8NGR8 309 aa16.25■□□□□ 0.19
VPS53-201ENST00000291074 CGB1A6NKQ9 187 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 OR10D4PQ8NGN7 298 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 OR2T10Q8NGZ9 312 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 OR2T6Q8NHC8 308 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 CD69Q07108 199 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 C11orf42Q8N5U0 333 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 TMEM186Q96B77 213 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 KAAG1Q9UBP8 84 aa16.24■□□□□ 0.19
VPS53-201ENST00000291074 IGLV2-23P01705 113 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 IGHV3-48P01763 117 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms