RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TRAPPC2P0DI81 140 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 TRAPPC2BP0DI82 140 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 CTRB1P17538 263 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 ZNF45Q02386 682 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 TRIM16LQ309B1 348 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 CTRB2Q6GPI1 263 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 ZNF343Q6P1L6 599 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 TMEM222Q9H0R3 208 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 NAA60Q9H7X0 242 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 RANGRFQ9HD47 186 aaPredicted RBP9.19□□□□□ -0.94
LIG3-213ENST00000590630 AKIP1Q9NQ31 210 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 OR51B2Q9Y5P1 312 aa9.19□□□□□ -0.94
LIG3-213ENST00000590630 IGHV4OR15-8A0A075B7B6 117 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 A0A087WW49 117 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 TEX50A0A1B0GTY4 177 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 RBMXL2O75526 392 aaKnown RBP9.18□□□□□ -0.94
LIG3-213ENST00000590630 OR5AC1P0C628 307 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 DEFA4P12838 97 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 HIST1H1BP16401 226 aaKnown RBP9.18□□□□□ -0.94
LIG3-213ENST00000590630 ZP3P21754 424 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 INPP1P49441 399 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 AKR1C2P52895 323 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 DHODHQ02127 395 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 ATP5G2Q06055 141 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 KLK9Q2XQG4 91 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 SP6Q3SY56 376 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 FAM209BQ5JX69 171 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 TRIQKQ629K1 86 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 ZNF57Q68EA5 555 aaPredicted RBP9.18□□□□□ -0.94
LIG3-213ENST00000590630 LINC00299Q6ZSB3 139 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 SGPP2Q8IWX5 399 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 OR4A16Q8NH70 328 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 LSM10Q969L4 123 aaKnown RBP9.18□□□□□ -0.94
LIG3-213ENST00000590630 TMEM56Q96MV1 263 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 SLC25A21Q9BQT8 299 aaPredicted RBP9.18□□□□□ -0.94
LIG3-213ENST00000590630 NDUFA4L2Q9NRX3 87 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 KLK9Q9UKQ9 250 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 NSG2Q9Y328 171 aa9.18□□□□□ -0.94
LIG3-213ENST00000590630 CYB5BO43169 146 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 WIPF1O43516 503 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 CDS2O95674 445 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 IGKV1-5P01602 117 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 REG1AP05451 166 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 P0C879 139 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 DEFA5Q01523 94 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 EXOSC2Q13868 293 aaKnown RBP9.17□□□□□ -0.94
LIG3-213ENST00000590630 BAK1Q16611 211 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 C15orf32Q32M92 178 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 REC114Q7Z4M0 266 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 ZNF429Q86V71 674 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 OR10W1Q8NGF6 305 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 GLYATL2Q8WU03 294 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 RBPMSQ93062 196 aaKnown RBP9.17□□□□□ -0.94
LIG3-213ENST00000590630 RRNAD1Q96FB5 475 aaKnown RBP9.17□□□□□ -0.94
LIG3-213ENST00000590630 GALNT14Q96FL9 552 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 FANCD2OSQ96PS1 177 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 PEF1Q9UBV8 284 aaKnown RBP9.17□□□□□ -0.94
LIG3-213ENST00000590630 KCNIP3Q9Y2W7 256 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 DNAH3Q8TD57 4116 aa9.17□□□□□ -0.94
LIG3-213ENST00000590630 IGLV11-55A0A075B6I3 123 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 ANKRD34BA5PLL1 514 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 NAP1L6A6NFF2 107 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 DBX1A6NMT0 343 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 SEC14L6B5MCN3 397 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 OVOL1O14753 267 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 OR2J3O76001 311 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 OR13C7P0DN81 318 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 HOXD3P31249 432 aaPredicted RBP9.16□□□□□ -0.94
LIG3-213ENST00000590630 SLURP1P55000 103 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 WT1-ASQ06250 92 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 EGFEM1PQ0D2K5 195 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 C9orf66Q5T8R8 295 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 C19orf35Q6ZS72 473 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 FAM219AQ8IW50 185 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 RNASE11Q8TAA1 199 aaKnown RBP9.16□□□□□ -0.94
LIG3-213ENST00000590630 DCUN1D4Q92564 292 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 DLX4Q92988 240 aaPredicted RBP9.16□□□□□ -0.94
LIG3-213ENST00000590630 TMEM230Q96A57 120 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 SDHCQ99643 169 aaPredicted RBP9.16□□□□□ -0.94
LIG3-213ENST00000590630 HINT2Q9BX68 163 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 THYN1Q9P016 225 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 ZMAT5Q9UDW3 170 aaKnown RBP9.16□□□□□ -0.94
LIG3-213ENST00000590630 FBXL7Q9UJT9 491 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 SORL1Q92673 2214 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 TGP01266 2768 aa9.16□□□□□ -0.94
LIG3-213ENST00000590630 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.15□□□□□ -0.94
LIG3-213ENST00000590630 PIGBOS1A0A0B4J2F0 54 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 CENPXA8MT69 81 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 ANXA3P12429 323 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 IL7P13232 177 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 AKR1C4P17516 323 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 INSL3P51460 131 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 MECP2P51608 486 aaKnown RBP9.15□□□□□ -0.94
LIG3-213ENST00000590630 HSPE1P61604 102 aaKnown RBP9.15□□□□□ -0.94
LIG3-213ENST00000590630 PRCDQ00LT1 54 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 RBMS2Q15434 407 aaKnown RBP9.15□□□□□ -0.94
LIG3-213ENST00000590630 CNPY1Q3B7I2 92 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 TMEM128Q5BJH2 165 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 OR1L6Q8NGR2 347 aa9.15□□□□□ -0.94
LIG3-213ENST00000590630 LHFPL5Q8TAF8 219 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms