RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TMEM187Q14656 261 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 IL34Q6ZMJ4 242 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 SELENOHQ8IZQ5 122 aaKnown RBP7.55□□□□□ -1.2
CLN3-220ENST00000566040 DMBX1Q8NFW5 382 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 OR1N2Q8NGR9 330 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 DCUN1D4Q92564 292 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 DLX4Q92988 240 aaPredicted RBP7.55□□□□□ -1.2
CLN3-220ENST00000566040 GALNT14Q96FL9 552 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 TMEM68Q96MH6 324 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 FYTTD1Q96QD9 318 aaKnown RBP7.55□□□□□ -1.2
CLN3-220ENST00000566040 SPIN2AQ99865 258 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 PRRT1Q99946 306 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 SPIN2BQ9BPZ2 258 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 QTRT1Q9BXR0 403 aaKnown RBP7.55□□□□□ -1.2
CLN3-220ENST00000566040 COA4Q9NYJ1 87 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 ZNF257Q9Y2Q1 563 aa7.55□□□□□ -1.2
CLN3-220ENST00000566040 SORL1Q92673 2214 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 CREBL2O60519 120 aaPredicted RBP7.54□□□□□ -1.2
CLN3-220ENST00000566040 OR2J3O76001 311 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 CD33P20138 364 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 HOXD3P31249 432 aaPredicted RBP7.54□□□□□ -1.2
CLN3-220ENST00000566040 IFITM3Q01628 133 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 DHODHQ02127 395 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 SPANXN2Q5MJ10 180 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 PVRIGQ6DKI7 326 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 TMEM65Q6PI78 240 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 ADAMTSL5Q6ZMM2 481 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 TOMM5Q8N4H5 51 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 ZFAND1Q8TCF1 268 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 RCC1LQ96I51 464 aaKnown RBP7.54□□□□□ -1.2
CLN3-220ENST00000566040 TMEM56Q96MV1 263 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 PHB2Q99623 299 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 AURKAIP1Q9NWT8 199 aaPredicted RBP7.54□□□□□ -1.2
CLN3-220ENST00000566040 S4R3C0 116 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 TMEM56-RWDD3S4R434 201 aa7.54□□□□□ -1.2
CLN3-220ENST00000566040 HUWE1Q7Z6Z7 4374 aaKnown RBP7.54□□□□□ -1.2
CLN3-220ENST00000566040 TEX13DA0A0J9YY54 714 aaPredicted RBP7.53□□□□□ -1.2
CLN3-220ENST00000566040 SERPINE2P07093 398 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 EXOSC2Q13868 293 aaKnown RBP7.53□□□□□ -1.2
CLN3-220ENST00000566040 ANKRD55Q3KP44 614 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 NMSQ5H8A3 153 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 ZNF429Q86V71 674 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 TMEM170AQ8WVE7 144 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 SRSF8Q9BRL6 282 aaKnown RBP7.53□□□□□ -1.2
CLN3-220ENST00000566040 MCUBQ9NWR8 336 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 COPZ2Q9P299 210 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 TBC1D24Q9ULP9 559 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 OR51B2Q9Y5P1 312 aa7.53□□□□□ -1.2
CLN3-220ENST00000566040 DNAH7Q8WXX0 4024 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.52□□□□□ -1.21
CLN3-220ENST00000566040 WI2-2373I1.2A0A1W2PRP0 233 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 ANKRD34BA5PLL1 514 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 FAM223BA6NKX1 122 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 LINC01619G3V211 115 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 K7EIL1 84 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 K7EIM0 57 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 ST8SIA3O43173 380 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 IGHV3-23P01764 117 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 HSPB1P04792 205 aaKnown RBP7.52□□□□□ -1.21
CLN3-220ENST00000566040 TRAPPC2P0DI81 140 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 TRAPPC2BP0DI82 140 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 ECI1P42126 302 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 PRCDQ00LT1 54 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 KLF5Q13887 457 aaPredicted RBP7.52□□□□□ -1.21
CLN3-220ENST00000566040 C15orf32Q32M92 178 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 BSXQ3C1V8 233 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 SPINK9Q5DT21 86 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 LINC00299Q6ZSB3 139 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 FAM223AQ8IWN6 122 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 OR2C3Q8N628 320 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 SLC35G3Q8N808 338 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 CCDC71LQ8N9Z2 235 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 ZNF114Q8NC26 417 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 NECAP1Q8NC96 275 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 OR1L8Q8NGR8 309 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 OR5B3Q8NH48 314 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 DEDD2Q8WXF8 326 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 GPR146Q96CH1 333 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 COMMD5Q9GZQ3 224 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 PTTG2Q9NZH5 202 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 FLVCR2Q9UPI3 526 aa7.52□□□□□ -1.21
CLN3-220ENST00000566040 F11RQ9Y624 299 aaKnown RBP7.52□□□□□ -1.21
CLN3-220ENST00000566040 PPP5D1E7EU14 171 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 INS-IGF2F8WCM5 200 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 ACTL6BO94805 426 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 NDUFB6O95139 128 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 HLA-AP01891 365 aaKnown RBP7.51□□□□□ -1.21
CLN3-220ENST00000566040 OR8U8P0C7N1 319 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 OR13C7P0DN81 318 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 CD40LGP29965 261 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 ERVK-16P61578 105 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 PPP1R1AQ13522 171 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 PDLIM3Q53GG5 364 aaPredicted RBP7.51□□□□□ -1.21
CLN3-220ENST00000566040 TMEM268Q5VZI3 342 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 ACSM6Q6P461 480 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 H2BFWTQ7Z2G1 175 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 LYZL2Q7Z4W2 148 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 HAPLN4Q86UW8 402 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 ZNF502Q8TBZ5 544 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 RBPMSQ93062 196 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms