RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NDUFB6O95139 128 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 DHFRP00374 187 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 TRAPPC2P0DI81 140 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 TRAPPC2BP0DI82 140 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 TMEM128Q5BJH2 165 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 TMEM268Q5VZI3 342 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 ZNF491Q8N8L2 437 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 GLYATL2Q8WU03 294 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 OR5B12Q96R08 314 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 PDCD10Q9BUL8 212 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 DNAH9Q9NYC9 4486 aa13.41□□□□□ -0.26
CLN3-217ENST00000565354 PIGBOS1A0A0B4J2F0 54 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 A0A0G2JLM5 398 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 TEX50A0A1B0GTY4 177 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 C13orf42A0A1B0GVH6 325 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 E7EUB6 86 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 CDS2O95674 445 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 IGKV1-5P01602 117 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 DEFA4P12838 97 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 SRPXP78539 464 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 MZT2BQ6NZ67 158 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 MRPL41Q8IXM3 137 aaKnown RBP13.4□□□□□ -0.26
CLN3-217ENST00000565354 SELENOHQ8IZQ5 122 aaKnown RBP13.4□□□□□ -0.26
CLN3-217ENST00000565354 LGI3Q8N145 548 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 TTC9CQ8N5M4 171 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 OR5B3Q8NH48 314 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 C4orf3Q8WVX3 66 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 TMEM56Q96MV1 263 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 ZNF257Q9Y2Q1 563 aa13.4□□□□□ -0.26
CLN3-217ENST00000565354 NPIPB5A8MRT5 1133 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 K7EIL1 84 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 PLA2G10O15496 165 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 IGHV3-11P01762 117 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 REG1AP05451 166 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 PSMB6P28072 239 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 RAB25P57735 213 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 TMEM187Q14656 261 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 HSD17B13Q7Z5P4 300 aaPredicted RBP13.39□□□□□ -0.27
CLN3-217ENST00000565354 FAM219AQ8IW50 185 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 LHFPL5Q8TAF8 219 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 MYOZ3Q8TDC0 251 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 IL22RA2Q969J5 263 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 LSM10Q969L4 123 aaKnown RBP13.39□□□□□ -0.27
CLN3-217ENST00000565354 SRSF8Q9BRL6 282 aaKnown RBP13.39□□□□□ -0.27
CLN3-217ENST00000565354 GNB4Q9HAV0 340 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 PRR13Q9NZ81 148 aa13.39□□□□□ -0.27
CLN3-217ENST00000565354 CYB5BO43169 146 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 UPK1BO75841 260 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 PRH1P02810 166 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 AREGP15514 252 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 BTCP35070 178 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 MYCNOSP40205 109 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 UBE2MP61081 183 aaKnown RBP13.38□□□□□ -0.27
CLN3-217ENST00000565354 SUPT4H1P63272 117 aaKnown RBP13.38□□□□□ -0.27
CLN3-217ENST00000565354 IZUMO4Q1ZYL8 232 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 DEFB136Q30KP8 78 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 DPF1Q92782 380 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 TMEM14BQ9NUH8 114 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 FLVCR2Q9UPI3 526 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 TMEM56-RWDD3S4R434 201 aa13.38□□□□□ -0.27
CLN3-217ENST00000565354 FAM240BA0A1B0GVZ2 78 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 A0A1B0GW64 132 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 CGB1A6NKQ9 187 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 CCL24O00175 119 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 SFT2D2O95562 160 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 IFNA17P01571 189 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 LGALS1P09382 135 aaKnown RBP13.37□□□□□ -0.27
CLN3-217ENST00000565354 OR13C7P0DN81 318 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 CD33P20138 364 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 PPP1R1AQ13522 171 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 KIAA0141Q14154 515 aaPredicted RBP13.37□□□□□ -0.27
CLN3-217ENST00000565354 SLC35G3Q8N808 338 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 OR10W1Q8NGF6 305 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 USMG5Q96IX5 58 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 WWC2-AS2Q96NR7 200 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 DUX3Q96PT4 197 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 NDUFA4L2Q9NRX3 87 aa13.37□□□□□ -0.27
CLN3-217ENST00000565354 FAM223BA6NKX1 122 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 OR2J3O76001 311 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 BRI3O95415 125 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 IGLL1P15814 213 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 HIST1H1BP16401 226 aaKnown RBP13.36□□□□□ -0.27
CLN3-217ENST00000565354 CTRB1P17538 263 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 HSPE1P61604 102 aaKnown RBP13.36□□□□□ -0.27
CLN3-217ENST00000565354 RHOGP84095 191 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 DEFA5Q01523 94 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 C4orf46Q504U0 113 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 CTRB2Q6GPI1 263 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 FAM223AQ8IWN6 122 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 WFDC9Q8NEX5 89 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 OR11H1Q8NG94 326 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 C20orf85Q9H1P6 137 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 PLEKHA3Q9HB20 300 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 ENY2Q9NPA8 101 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 TNCP24821 2201 aa13.36□□□□□ -0.27
CLN3-217ENST00000565354 A0A0B4J2A0 478 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 A0A0G2JRQ6 117 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 IGLC7A0M8Q6 106 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 DBX1A6NMT0 343 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ST8SIA3O43173 380 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms