RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 Q6ZRG5 221 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 RFLNAQ6ZTI6 216 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 C17orf64Q86WR6 236 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 TMEM25Q86YD3 366 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 TDHQ8IZJ6 230 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 KIR3DL3Q8N743 410 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR2M3Q8NG83 312 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR11H6Q8NGC7 330 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR51G1Q8NGK1 321 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR10G9Q8NGN4 311 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR2T10Q8NGZ9 312 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CMTM2Q8TAZ6 248 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZNF502Q8TBZ5 544 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 SCGB1C1Q8TD33 95 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 GNPNAT1Q96EK6 184 aaPredicted RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 C2orf50Q96LR7 162 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZNF75AQ96N20 296 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR4C12Q96R67 309 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 NRTNQ99748 197 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 PECRQ9BY49 303 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 LPAR5Q9H1C0 372 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 GTSF1LQ9H1H1 148 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR2D2Q9H210 308 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 PRORYQ9H606 182 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CALHM2Q9HA72 323 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CISHQ9NSE2 258 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 B4GALT7Q9UBV7 327 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 SS18L2Q9UHA2 77 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 AK3Q9UIJ7 227 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 FIS1Q9Y3D6 152 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 YTHDF2Q9Y5A9 579 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 SMAD5-AS1Q9Y6J3 95 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 BCORQ6W2J9 1755 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 TJP1Q07157 1748 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ARAP2Q8WZ64 1704 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 AFDNP55196 1824 aaKnown RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 TRAV18A0A075B6X5 111 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 A0A087WZ39 114 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 IGHV3-20A0A0C4DH32 117 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 LYRM9A8MSI8 78 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CEACAM18A8MTB9 384 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 GEMIN2O14893 280 aaKnown RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 TNFSF12O43508 249 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 MPDU1O75352 247 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 MPZL1O95297 269 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 SFT2D2O95562 160 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 RENP00797 406 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 GPX1P07203 203 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 SRP19P09132 144 aaKnown RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 SPINK8P0C7L1 97 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 FABP2P12104 132 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 PVRP15151 417 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CDK2P24941 298 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 GRPRP30550 384 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 SRIP30626 198 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 G6PCP35575 357 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 RBMXP38159 391 aaKnown RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 KIR2DS2P43631 304 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CXCL12P48061 93 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 P2RX1P51575 399 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CRISP3P54108 245 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ERVK-16P61578 105 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 FOXF1Q12946 379 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 HES1Q14469 280 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF266Q14584 549 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 IHHQ14623 411 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ATXN7L3Q14CW9 347 aaPredicted RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 MPV17LQ2QL34 196 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 TDRG1Q3Y452 100 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 LINC01620Q4KN68 170 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 DMRTC1Q5HYR2 192 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 TTC32Q5I0X7 151 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 BVES-AS1Q5T3Y7 98 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 TMEM215Q68D42 235 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 DMKNQ6E0U4 476 aaPredicted RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 SPINK14Q6IE38 97 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 FAM166AQ6J272 317 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF343Q6P1L6 599 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 UNQ5815/PRO19632Q6UWF5 114 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 SIGLEC15Q6ZMC9 328 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CMC1Q7Z7K0 106 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 UMODL1-AS1Q8N2C9 162 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR2L13Q8N349 312 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF709Q8N972 641 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 VN1R2Q8NFZ6 395 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR4F17Q8NGA8 305 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR6T1Q8NGN1 323 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR4A5Q8NH83 315 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 KIR2DL5BQ8NHK3 375 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 STAG3L4Q8TBR4 150 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 MRPL30Q8TCC3 161 aaKnown RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 C18orf32Q8TCD1 76 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 BLNKQ8WV28 456 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR5P2Q8WZ92 322 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 RASL10AQ92737 203 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 MAL2Q969L2 176 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ABHD14BQ96IU4 210 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 OR4F4Q96R69 305 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 SPIN2AQ99865 258 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms