RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CENPXA8MT69 81 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RBMXL2O75526 392 aaKnown RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 CDS2O95674 445 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 DHFRP00374 187 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 IGKV1-5P01602 117 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 PRH1P02810 166 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 AKR1C4P17516 323 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 PSMB6P28072 239 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RAB25P57735 213 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RHOGP84095 191 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RBMS2Q15434 407 aaKnown RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 HSD17B13Q7Z5P4 300 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 TMED4Q7Z7H5 227 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 OR1N2Q8NGR9 330 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 OR5B3Q8NH48 314 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RNASE11Q8TAA1 199 aaKnown RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 GLYATL2Q8WU03 294 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 RRNAD1Q96FB5 475 aaKnown RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 GALNT14Q96FL9 552 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 USMG5Q96IX5 58 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 C7orf50Q9BRJ6 194 aaKnown RBP10.53□□□□□ -0.72
SHMT2-228ENST00000557302 CCDC32Q9BV29 185 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 HINT2Q9BX68 163 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 TMEM14BQ9NUH8 114 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 IGLC7A0M8Q6 106 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 FAM223BA6NKX1 122 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 DBX1A6NMT0 343 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 REG1AP05451 166 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 CRYGCP07315 174 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 P0C879 139 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 ANXA3P12429 323 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 CTRB1P17538 263 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 CCR6P51684 374 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 DEFA5Q01523 94 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 ZNF616Q08AN1 781 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 FHL3Q13643 280 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 CTRB2Q6GPI1 263 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 FAM223AQ8IWN6 122 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 DPF1Q92782 380 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 RBPMSQ93062 196 aaKnown RBP10.52□□□□□ -0.73
SHMT2-228ENST00000557302 LSM10Q969L4 123 aaKnown RBP10.52□□□□□ -0.73
SHMT2-228ENST00000557302 ALX4Q9H161 411 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-228ENST00000557302 NDUFA4L2Q9NRX3 87 aa10.52□□□□□ -0.73
SHMT2-228ENST00000557302 TRBV9A0A0B4J1U6 114 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 OR8U8P0C7N1 319 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 OR13C7P0DN81 318 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 DEFA4P12838 97 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 ATP5G2Q06055 141 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 TMEM187Q14656 261 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 IZUMO4Q1ZYL8 232 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 TMEM128Q5BJH2 165 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 TMEM268Q5VZI3 342 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 C19orf35Q6ZS72 473 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 FAM219AQ8IW50 185 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 SELENOHQ8IZQ5 122 aaKnown RBP10.51□□□□□ -0.73
SHMT2-228ENST00000557302 NECAP1Q8NC96 275 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 OR10W1Q8NGF6 305 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 LHFPL5Q8TAF8 219 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 RCC1LQ96I51 464 aaKnown RBP10.51□□□□□ -0.73
SHMT2-228ENST00000557302 TMEM56Q96MV1 263 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 TMEM56-RWDD3S4R434 201 aa10.51□□□□□ -0.73
SHMT2-228ENST00000557302 IGHV4OR15-8A0A075B7B6 117 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 A0A087WW49 117 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 A0A0B4J293 547 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 A0A0G2JRQ6 117 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 LINC01619G3V211 115 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 OR2J3O76001 311 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 NDUFB6O95139 128 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 HSPB1P04792 205 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 IGLL1P15814 213 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 HIST1H1BP16401 226 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 MECP2P51608 486 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 HSPE1P61604 102 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 SUPT4H1P63272 117 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 SRPXP78539 464 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 WT1-ASQ06250 92 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 SAMD5Q5TGI4 173 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 ZNF429Q86V71 674 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 CENPSQ8N2Z9 138 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 IL22RA2Q969J5 263 aa10.5□□□□□ -0.73
SHMT2-228ENST00000557302 MCRIP2Q9BUT9 160 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 WDR12Q9GZL7 423 aaKnown RBP10.5□□□□□ -0.73
SHMT2-228ENST00000557302 ANKRD34BA5PLL1 514 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 G3V4G9 280 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 CYB5BO43169 146 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 DUS4LO95620 317 aaKnown RBP10.49□□□□□ -0.73
SHMT2-228ENST00000557302 VAMP1P23763 118 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 BTCP35070 178 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 PRCDQ00LT1 54 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 EXOSC2Q13868 293 aaKnown RBP10.49□□□□□ -0.73
SHMT2-228ENST00000557302 ZNF846Q147U1 533 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 KLK9Q2XQG4 91 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 C15orf32Q32M92 178 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 OXLD1Q5BKU9 147 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 ZNF343Q6P1L6 599 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 C1QL4Q86Z23 238 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 LGI3Q8N145 548 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 FANCD2OSQ96PS1 177 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 PDCD10Q9BUL8 212 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 RANGRFQ9HD47 186 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms