RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 QTRT1Q9BXR0 403 aaKnown RBP15.32■□□□□ 0.04
CPSF1-209ENST00000532725 TMEM14BQ9NUH8 114 aa15.32■□□□□ 0.04
CPSF1-209ENST00000532725 PRNDQ9UKY0 176 aa15.32■□□□□ 0.04
CPSF1-209ENST00000532725 DBX1A6NMT0 343 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 IGKV1-5P01602 117 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 P0C879 139 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 TRAPPC2P0DI81 140 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 TRAPPC2BP0DI82 140 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 ZNF343Q6P1L6 599 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 NECAP1Q8NC96 275 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 OR10W1Q8NGF6 305 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 GLYATL2Q8WU03 294 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 NAA60Q9H7X0 242 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 FKBP11Q9NYL4 201 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 OR51B2Q9Y5P1 312 aa15.31■□□□□ 0.04
CPSF1-209ENST00000532725 TEX13DA0A0J9YY54 714 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-209ENST00000532725 CRYM-AS1A6NIL9 109 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 FAM223BA6NKX1 122 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 CDS2O95674 445 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 OR5AC1P0C628 307 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 ATP5G2Q06055 141 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 THOC7Q6I9Y2 204 aaKnown RBP15.3■□□□□ 0.04
CPSF1-209ENST00000532725 FAM223AQ8IWN6 122 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 DCUN1D4Q92564 292 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 DLX4Q92988 240 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-209ENST00000532725 TMEM230Q96A57 120 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 TMEM222Q9H0R3 208 aa15.3■□□□□ 0.04
CPSF1-209ENST00000532725 RANGRFQ9HD47 186 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-209ENST00000532725 C15orf61A6NNL5 157 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 OR2J3O76001 311 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 REG1AP05451 166 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 SLURP1P55000 103 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 WT1-ASQ06250 92 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 IZUMO4Q1ZYL8 232 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 OR5B3Q8NH48 314 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 OR4A16Q8NH70 328 aa15.29■□□□□ 0.04
CPSF1-209ENST00000532725 A0A0B4J293 547 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 ANKRD34BA5PLL1 514 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 ATG12O94817 140 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 DHFRP00374 187 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 DHODHQ02127 395 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 TRIM16LQ309B1 348 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 CNPY1Q3B7I2 92 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 ZNF57Q68EA5 555 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-209ENST00000532725 HSD17B13Q7Z5P4 300 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-209ENST00000532725 PEF1Q9UBV8 284 aaKnown RBP15.28■□□□□ 0.04
CPSF1-209ENST00000532725 FBXL7Q9UJT9 491 aa15.28■□□□□ 0.04
CPSF1-209ENST00000532725 IGLV11-55A0A075B6I3 123 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 WIPF1O43516 503 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 NDUFB8O95169 186 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 TRBV12-3P01733 135 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 OR13C7P0DN81 318 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 HIST1H1BP16401 226 aaKnown RBP15.27■□□□□ 0.04
CPSF1-209ENST00000532725 EGFEM1PQ0D2K5 195 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 C15orf32Q32M92 178 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 ZNF429Q86V71 674 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 SGPP2Q8IWX5 399 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 SELENOHQ8IZQ5 122 aaKnown RBP15.27■□□□□ 0.04
CPSF1-209ENST00000532725 LHFPL5Q8TAF8 219 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 GALNT14Q96FL9 552 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 HINT2Q9BX68 163 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 GPR61Q9BZJ8 451 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 KCNIP3Q9Y2W7 256 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 DMRT1Q9Y5R6 373 aa15.27■□□□□ 0.04
CPSF1-209ENST00000532725 DEFA4P12838 97 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 KRTAP10-11P60412 298 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 HSPE1P61604 102 aaKnown RBP15.26■□□□□ 0.03
CPSF1-209ENST00000532725 SUPT4H1P63272 117 aaKnown RBP15.26■□□□□ 0.03
CPSF1-209ENST00000532725 TMEM187Q14656 261 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 LINC00299Q6ZSB3 139 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 LSM10Q969L4 123 aaKnown RBP15.26■□□□□ 0.03
CPSF1-209ENST00000532725 TMEM56Q96MV1 263 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 SLC25A21Q9BQT8 299 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-209ENST00000532725 TMEM56-RWDD3S4R434 201 aa15.26■□□□□ 0.03
CPSF1-209ENST00000532725 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 A0A0G2JRQ6 117 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 SEC14L6B5MCN3 397 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 OVOL1O14753 267 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 PRB2P02812 416 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 AKR1C4P17516 323 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 HOXD3P31249 432 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 AKR1C2P52895 323 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 EXOSC2Q13868 293 aaKnown RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 KLF5Q13887 457 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 TRIQKQ629K1 86 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 Q6ZRM9 215 aa15.25■□□□□ 0.03
CPSF1-209ENST00000532725 RBPMSQ93062 196 aaKnown RBP15.25■□□□□ 0.03
CPSF1-209ENST00000532725 DNAH3Q8TD57 4116 aa15.24■□□□□ 0.03
CPSF1-209ENST00000532725 ZP3P21754 424 aa15.24■□□□□ 0.03
CPSF1-209ENST00000532725 C9orf66Q5T8R8 295 aa15.24■□□□□ 0.03
CPSF1-209ENST00000532725 RRNAD1Q96FB5 475 aaKnown RBP15.24■□□□□ 0.03
CPSF1-209ENST00000532725 NAP1L6A6NFF2 107 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 IL7P13232 177 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 INPP1P49441 399 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 MFAP2P55001 183 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 PRCDQ00LT1 54 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 FAM219AQ8IW50 185 aa15.23■□□□□ 0.03
CPSF1-209ENST00000532725 BMPR1BO00238 502 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 ST8SIA3O43173 380 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 CCR6P51684 374 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms