RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 C13orf42A0A1B0GVH6 325 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 G3V4G9 280 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 RBMXL2O75526 392 aaKnown RBP12.27□□□□□ -0.45
UPF3A-208ENST00000484246 CDS2O95674 445 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 DHFRP00374 187 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 IGKV1-5P01602 117 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 HSPB1P04792 205 aaKnown RBP12.27□□□□□ -0.45
UPF3A-208ENST00000484246 OR5AC1P0C628 307 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 RHOGP84095 191 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 DHODHQ02127 395 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 CNPY1Q3B7I2 92 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 FAM209BQ5JX69 171 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 TRIQKQ629K1 86 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 ZNF343Q6P1L6 599 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 H2BFWTQ7Z2G1 175 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 ZNF429Q86V71 674 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 GLYATL2Q8WU03 294 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 FANCD2OSQ96PS1 177 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 TNCP24821 2201 aa12.27□□□□□ -0.45
UPF3A-208ENST00000484246 TEX13DA0A0J9YY54 714 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TEX50A0A1B0GTY4 177 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 NAP1L6A6NFF2 107 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 LINC01619G3V211 115 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TRAPPC2P0DI81 140 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TRAPPC2BP0DI82 140 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 HIST1H1BP16401 226 aaKnown RBP12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TRIM16LQ309B1 348 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 AARDQ4LEZ3 155 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 FAM219AQ8IW50 185 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 IL22RA2Q969J5 263 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 LSM10Q969L4 123 aaKnown RBP12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TMEM56Q96MV1 263 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 OR5B12Q96R08 314 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 C7orf50Q9BRJ6 194 aaKnown RBP12.26□□□□□ -0.45
UPF3A-208ENST00000484246 ALX4Q9H161 411 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-208ENST00000484246 PTTG2Q9NZH5 202 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 OR51B2Q9Y5P1 312 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 TMEM56-RWDD3S4R434 201 aa12.26□□□□□ -0.45
UPF3A-208ENST00000484246 IGLV11-55A0A075B6I3 123 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 IGHV4OR15-8A0A075B7B6 117 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 A0A087WW49 117 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 DBX1A6NMT0 343 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 IGHV3-11P01762 117 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 IL7P13232 177 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 IGLL1P15814 213 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 AKR1C2P52895 323 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 SP6Q3SY56 376 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 OXLD1Q5BKU9 147 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 ZNF57Q68EA5 555 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-208ENST00000484246 SGPP2Q8IWX5 399 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 DPF1Q92782 380 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 RBPMSQ93062 196 aaKnown RBP12.25□□□□□ -0.45
UPF3A-208ENST00000484246 RANGRFQ9HD47 186 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-208ENST00000484246 NSG2Q9Y328 171 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 MEGF8Q7Z7M0 2845 aa12.25□□□□□ -0.45
UPF3A-208ENST00000484246 INS-IGF2F8WCM5 200 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 PRH1P02810 166 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 ZP3P21754 424 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 SUPT4H1P63272 117 aaKnown RBP12.24□□□□□ -0.45
UPF3A-208ENST00000484246 PRCDQ00LT1 54 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 WT1-ASQ06250 92 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 RBMS2Q15434 407 aaKnown RBP12.24□□□□□ -0.45
UPF3A-208ENST00000484246 OR4A16Q8NH70 328 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 LHFPL5Q8TAF8 219 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 CCDC32Q9BV29 185 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 KCNIP3Q9Y2W7 256 aa12.24□□□□□ -0.45
UPF3A-208ENST00000484246 A0A0B4J293 547 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 PIGBOS1A0A0B4J2F0 54 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 INPP1P49441 399 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 HSPE1P61604 102 aaKnown RBP12.23□□□□□ -0.45
UPF3A-208ENST00000484246 SRPXP78539 464 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 ATP5G2Q06055 141 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 EGFEM1PQ0D2K5 195 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 EXOSC2Q13868 293 aaKnown RBP12.23□□□□□ -0.45
UPF3A-208ENST00000484246 TMEM187Q14656 261 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 C15orf32Q32M92 178 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 TMEM128Q5BJH2 165 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 SELENOHQ8IZQ5 122 aaKnown RBP12.23□□□□□ -0.45
UPF3A-208ENST00000484246 ZNF114Q8NC26 417 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 OR10W1Q8NGF6 305 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 S100ZQ8WXG8 99 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 RRNAD1Q96FB5 475 aaKnown RBP12.23□□□□□ -0.45
UPF3A-208ENST00000484246 PEF1Q9UBV8 284 aaKnown RBP12.23□□□□□ -0.45
UPF3A-208ENST00000484246 DMRT1Q9Y5R6 373 aa12.23□□□□□ -0.45
UPF3A-208ENST00000484246 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.22□□□□□ -0.45
UPF3A-208ENST00000484246 A0A0G2JRQ6 117 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 CYB5BO43169 146 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 OR2J3O76001 311 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 OR13C7P0DN81 318 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 BTCP35070 178 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 RAB25P57735 213 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 UBE2MP61081 183 aaKnown RBP12.22□□□□□ -0.45
UPF3A-208ENST00000484246 DEFA5Q01523 94 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 PDLIM3Q53GG5 364 aaPredicted RBP12.22□□□□□ -0.45
UPF3A-208ENST00000484246 C19orf35Q6ZS72 473 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 C1QL4Q86Z23 238 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 OR1L6Q8NGR2 347 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 FBXL7Q9UJT9 491 aa12.22□□□□□ -0.45
UPF3A-208ENST00000484246 F11RQ9Y624 299 aaKnown RBP12.22□□□□□ -0.45
UPF3A-208ENST00000484246 NDUFB6O95139 128 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms