RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 NAA60Q9H7X0 242 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 PRNDQ9UKY0 176 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 A6NHS1 94 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 DBX1A6NMT0 343 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 DUS4LO95620 317 aaKnown RBP14.4□□□□□ -0.1
SHH-203ENST00000435425 AKR1C4P17516 323 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 MECP2P51608 486 aaKnown RBP14.4□□□□□ -0.1
SHH-203ENST00000435425 CNPY1Q3B7I2 92 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 RNASE11Q8TAA1 199 aaKnown RBP14.4□□□□□ -0.1
SHH-203ENST00000435425 DCUN1D4Q92564 292 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 MCRIP2Q9BUT9 160 aaKnown RBP14.4□□□□□ -0.1
SHH-203ENST00000435425 FBXL7Q9UJT9 491 aa14.4□□□□□ -0.1
SHH-203ENST00000435425 TRBV9A0A0B4J1U6 114 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 IGLC7A0M8Q6 106 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 CRYM-AS1A6NIL9 109 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 FAM223BA6NKX1 122 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 C15orf61A6NNL5 157 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 DHFRP00374 187 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 IGKV1-5P01602 117 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 CRYGCP07315 174 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 CTRB1P17538 263 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 UCP1P25874 307 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 HOXD3P31249 432 aaPredicted RBP14.39□□□□□ -0.11
SHH-203ENST00000435425 CTRB2Q6GPI1 263 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 FAM223AQ8IWN6 122 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 SGPP2Q8IWX5 399 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 CADM3Q8N126 398 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 DLX4Q92988 240 aaPredicted RBP14.39□□□□□ -0.11
SHH-203ENST00000435425 SDHCQ99643 169 aaPredicted RBP14.39□□□□□ -0.11
SHH-203ENST00000435425 TMEM222Q9H0R3 208 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 RANGRFQ9HD47 186 aaPredicted RBP14.39□□□□□ -0.11
SHH-203ENST00000435425 FKBP11Q9NYL4 201 aa14.39□□□□□ -0.11
SHH-203ENST00000435425 SEC14L6B5MCN3 397 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 B3GALNT1O75752 331 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 ATG12O94817 140 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 NDUFB8O95169 186 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 FGF2P09038 288 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 OR13C7P0DN81 318 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 EXOSC2Q13868 293 aaKnown RBP14.38□□□□□ -0.11
SHH-203ENST00000435425 ZNF343Q6P1L6 599 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 TMED4Q7Z7H5 227 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 NECAP1Q8NC96 275 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 GLYATL2Q8WU03 294 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 TMEM230Q96A57 120 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 NDUFA4L2Q9NRX3 87 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 TMEM14BQ9NUH8 114 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 PRR13Q9NZ81 148 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 PEF1Q9UBV8 284 aaKnown RBP14.38□□□□□ -0.11
SHH-203ENST00000435425 S4R3C0 116 aa14.38□□□□□ -0.11
SHH-203ENST00000435425 OVOL1O14753 267 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 TRBV12-3P01733 135 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 IGHV3-23P01764 117 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 DHODHQ02127 395 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 WT1-ASQ06250 92 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 C15orf32Q32M92 178 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 KPRPQ5T749 579 aaPredicted RBP14.37□□□□□ -0.11
SHH-203ENST00000435425 THOC7Q6I9Y2 204 aaKnown RBP14.37□□□□□ -0.11
SHH-203ENST00000435425 OR5B3Q8NH48 314 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 LHFPL5Q8TAF8 219 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 LSM10Q969L4 123 aaKnown RBP14.37□□□□□ -0.11
SHH-203ENST00000435425 RRNAD1Q96FB5 475 aaKnown RBP14.37□□□□□ -0.11
SHH-203ENST00000435425 TMEM56Q96MV1 263 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 FANCD2OSQ96PS1 177 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 SRSF8Q9BRL6 282 aaKnown RBP14.37□□□□□ -0.11
SHH-203ENST00000435425 GPR61Q9BZJ8 451 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 KCNIP3Q9Y2W7 256 aa14.37□□□□□ -0.11
SHH-203ENST00000435425 A0A0G2JRQ6 117 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 CDS2O95674 445 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 HIST1H1BP16401 226 aaKnown RBP14.36□□□□□ -0.11
SHH-203ENST00000435425 CCR6P51684 374 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 SPINK9Q5DT21 86 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 TMEM268Q5VZI3 342 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 SELENOHQ8IZQ5 122 aaKnown RBP14.36□□□□□ -0.11
SHH-203ENST00000435425 NOTCH3Q9UM47 2321 aa14.36□□□□□ -0.11
SHH-203ENST00000435425 IL7P13232 177 aa14.35□□□□□ -0.11
SHH-203ENST00000435425 C9orf66Q5T8R8 295 aa14.35□□□□□ -0.11
SHH-203ENST00000435425 SLC25A24Q6NUK1 477 aa14.35□□□□□ -0.11
SHH-203ENST00000435425 HSD17B13Q7Z5P4 300 aaPredicted RBP14.35□□□□□ -0.11
SHH-203ENST00000435425 DEDD2Q8WXF8 326 aa14.35□□□□□ -0.11
SHH-203ENST00000435425 RBPMSQ93062 196 aaKnown RBP14.35□□□□□ -0.11
SHH-203ENST00000435425 IGLV11-55A0A075B6I3 123 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 A0A0B4J293 547 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 P0C879 139 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 ZP3P21754 424 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 HSPE1P61604 102 aaKnown RBP14.34□□□□□ -0.11
SHH-203ENST00000435425 TMEM187Q14656 261 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 SLC25A21Q9BQT8 299 aaPredicted RBP14.34□□□□□ -0.11
SHH-203ENST00000435425 PDCD10Q9BUL8 212 aa14.34□□□□□ -0.11
SHH-203ENST00000435425 NAP1L6A6NFF2 107 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 CENPXA8MT69 81 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 PPP5D1E7EU14 171 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 CYB5BO43169 146 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 ST8SIA3O43173 380 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 IFNA17P01571 189 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 KRTAP10-11P60412 298 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 SUPT4H1P63272 117 aaKnown RBP14.33□□□□□ -0.12
SHH-203ENST00000435425 PRCDQ00LT1 54 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 RPEL1Q2QD12 228 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 EEF1AKMT3Q96AZ1 226 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 GPR146Q96CH1 333 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms