RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 OR8B12Q8NGG6 310 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 OR4X1Q8NH49 305 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 CDC26Q8NHZ8 85 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 MRPL30Q8TCC3 161 aaKnown RBP2.4□□□□□ -2.03
UPF3B-203ENST00000478840 CCDC94Q9BW85 323 aaPredicted RBP2.4□□□□□ -2.03
UPF3B-203ENST00000478840 TRIM4Q9C037 500 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 CISHQ9NSE2 258 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 PAQR5Q9NXK6 330 aaPredicted RBP2.4□□□□□ -2.03
UPF3B-203ENST00000478840 PRELID3BQ9Y3B1 194 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 PIK3C2GO75747 1445 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 ADAMTS7Q9UKP4 1686 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 TRBV20OR9-2A0A075B6H5 130 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 A0A0J9YW62 118 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 TMEM269A0A1B0GVZ9 245 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 OR4C46A6NHA9 309 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 I3L521 148 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 FAAHO00519 579 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 C1QAP02745 245 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 CBR1P16152 277 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 CSN1S1P47710 185 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 RUNX1Q01196 453 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 MEF2BQ02080 365 aaPredicted RBP2.39□□□□□ -2.03
UPF3B-203ENST00000478840 CDK10Q15131 360 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 TMED2Q15363 201 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 PABPC1L2AQ5JQF8 200 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 OR6V1Q8N148 313 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 SLC35F6Q8N357 371 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 DNAJC30Q96LL9 226 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 ULBP3Q9BZM4 244 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 WDR61Q9GZS3 305 aaKnown RBP2.39□□□□□ -2.03
UPF3B-203ENST00000478840 EFCAB1Q9HAE3 211 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 IDI2-AS1Q9NZ38 188 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 DOK5Q9P104 306 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 RBM7Q9Y580 266 aaKnown RBP2.39□□□□□ -2.03
UPF3B-203ENST00000478840 PCF11O94913 1555 aaKnown RBP2.39□□□□□ -2.03
UPF3B-203ENST00000478840 WDR90Q96KV7 1748 aa2.39□□□□□ -2.03
UPF3B-203ENST00000478840 TRAV26-2A0A0B4J265 109 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 LEPROTO15243 131 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 NOS1APO75052 506 aaPredicted RBP2.38□□□□□ -2.03
UPF3B-203ENST00000478840 S100A7P31151 101 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 CCL20P78556 96 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 RALGAPA2Q2PPJ7 1873 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 AGTRAPQ6RW13 159 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 Q6ZS52 159 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 DYNAPQ8N1N2 210 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 ZNF676Q8N7Q3 588 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 NIPSNAP1Q9BPW8 284 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 CMSS1Q9BQ75 279 aaKnown RBP2.38□□□□□ -2.03
UPF3B-203ENST00000478840 FUT9Q9Y231 359 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 ARL2BPQ9Y2Y0 163 aa2.38□□□□□ -2.03
UPF3B-203ENST00000478840 HECW2Q9P2P5 1572 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 FAM236DA0A1B0GTK5 79 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 BPGMP07738 259 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 CST2P09228 141 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 FAM236CP0DP71 79 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 RPS20P60866 119 aaKnown RBP2.37□□□□□ -2.03
UPF3B-203ENST00000478840 KCNJ8Q15842 424 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 TMEM42Q69YG0 159 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 OR5J2Q8NH18 312 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 C20orf27Q9GZN8 174 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 COMMD5Q9GZQ3 224 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 CXCL16Q9H2A7 254 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 NDUFB11Q9NX14 153 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 PRO2289Q9P1D8 64 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 HHLA3Q9XRX5 114 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 TMEM56-RWDD3S4R434 201 aa2.37□□□□□ -2.03
UPF3B-203ENST00000478840 LY6LH3BQJ8 138 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 PRM2P04554 102 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 TFPTP0C1Z6 253 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 PSMB8P28062 276 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 S100A5P33763 92 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 ZNF90Q03938 601 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 ZNF181Q2M3W8 571 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 C9orf64Q5T6V5 341 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 LYZL1Q6UWQ5 148 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 ANKRD29Q8N6D5 301 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 DGCR14Q96DF8 476 aaKnown RBP2.36□□□□□ -2.03
UPF3B-203ENST00000478840 FBXL12Q9NXK8 326 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 IL36BQ9NZH7 164 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 COL4A2P08572 1712 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 SCN9AQ15858 1988 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 ROBO3Q96MS0 1386 aa2.36□□□□□ -2.03
UPF3B-203ENST00000478840 CAMSAP1Q5T5Y3 1602 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 ARHGAP32A7KAX9 2087 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 hADV38S2A0JD32 116 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 ZNF878C9JN71 531 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 OR7C1O76099 320 aaPredicted RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 SERPINA1P01009 418 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 EMP1P54849 157 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 TPI1P60174 286 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 HIST1H4AP62805 103 aaKnown RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 RPL18Q07020 188 aaKnown RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 SLC35E3Q7Z769 313 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 OOSP2Q86WS3 158 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 OR52L1Q8NGH7 329 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 OR13C4Q8NGS5 318 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 ZCCHC13Q8WW36 166 aaKnown RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 MRPS24Q96EL2 167 aaKnown RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 BTF3L4Q96K17 158 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms