RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 Q6ZS52 159 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 OOSP2Q86WS3 158 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TPRX1Q8N7U7 411 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 COX18Q8N8Q8 333 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 LINC01587Q99440 93 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 RTBDNQ9BSG5 229 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SFXN3Q9BWM7 321 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 BANF2Q9H503 90 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 JPT2Q9H910 190 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 PNRC2Q9NPJ4 139 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM106BQ9NUM4 274 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TECRQ9NZ01 308 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 AK3Q9UIJ7 227 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 ASF1AQ9Y294 204 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 MAST4O15021 2626 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 F5P12259 2224 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 NAV2Q8IVL1 2488 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 EEF1E1-BLOC1S5C9J1V9 151 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 C9JQL5 133 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM178BH3BS89 294 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 H3BTX0 84 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 CDC42EP2O14613 210 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 SPINT2O43291 252 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 EEF1E1O43324 174 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 BCL2L11O43521 198 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TBL1XO60907 577 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PGLYRP1O75594 196 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 STK17BO94768 372 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TBX6O95947 436 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 HBE1P02100 147 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 GPX1P07203 203 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC25A6P12236 298 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PLA2G2AP14555 144 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 BTCP35070 178 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 KLRD1Q13241 179 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF672Q499Z4 452 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TSPO2Q5TGU0 170 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF57Q68EA5 555 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 STAC2Q6ZMT1 411 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM91Q6ZNR0 172 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 GDPGP1Q6ZNW5 385 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 Q6ZTK2 550 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 Q6ZUT4 128 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 KCNRGQ8N5I3 272 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF709Q8N972 641 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 OR2M3Q8NG83 312 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 OR4F17Q8NGA8 305 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PIFOQ8TCI5 191 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM54Q969K7 222 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 RITA1Q96K30 269 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PGLYRP3Q96LB9 341 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 OR4F4Q96R69 305 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 SSBP3Q9BWW4 388 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ULBP3Q9BZM4 244 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 TVP23BQ9NYZ1 205 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 LOC400499M0QZD8 3231 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 IGLV3-10A0A075B6K4 115 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 FXYD6-FXYD2A0A087WZ82 144 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 KANTRA0A1W2PQU2 76 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 RBFOX3A6NFN3 312 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 CD300LBA8K4G0 201 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 BBIP1A8MTZ0 92 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF670-ZNF695F2Z2N8 137 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 K7EQS6 105 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 CHEK1O14757 476 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 RER1O15258 196 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 DHRS3O75911 302 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 H1F0P07305 194 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 HIST1H1DP16402 221 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 BCL3P20749 454 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 SRYQ05066 204 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF345Q14585 488 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF141Q15928 474 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 MS4A13Q5J8X5 152 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 IBA57Q5T440 356 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 DMKNQ6E0U4 476 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 IGFL2Q6UWQ7 119 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF730Q6ZMV8 503 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF534Q76KX8 674 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF695Q8IW36 515 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PGBD5Q8N414 524 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PRR26Q8N8Z3 221 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 OR5AR1Q8NGP9 310 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 OR10G6Q8NH81 332 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 RNF128Q8TEB7 428 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 C2orf48Q96LS8 159 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF471Q9BX82 626 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 FXYD6Q9H0Q3 95 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 MDFICQ9P1T7 246 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 IL36AQ9UHA7 158 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 POLR1DQ9Y2S0 133 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 MED31Q9Y3C7 131 aa3.93□□□□□ -1.78
CCDC88A-209ENST00000456975 PCNX2A6NKB5 2137 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 IGSF10Q6WRI0 2623 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 DSPP15924 2871 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 SCO2A0A1W2PP80 73 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 MGST3O14880 152 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 CRXO43186 299 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 REM1O75628 298 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 SFT2D2O95562 160 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms