RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 OR4C46A6NHA9 309 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 SOCS1O15524 211 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 HSBP1O75506 76 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 VENTXO95231 258 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 FABP2P12104 132 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 OR1D5P58170 312 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 FXYD4P59646 89 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 ZNF726P1Q15940 193 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 CXorf66Q5JRM2 361 aaPredicted RBP9.16□□□□□ -0.94
CLK3-226ENST00000569406 ULBP2Q9BZM5 246 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 VPREB3Q9UKI3 123 aa9.16□□□□□ -0.94
CLK3-226ENST00000569406 COA3Q9Y2R0 106 aaPredicted RBP9.16□□□□□ -0.94
CLK3-226ENST00000569406 SH2D6Q7Z4S9 175 aa9.15□□□□□ -0.94
CLK3-226ENST00000569406 IGHV1OR21-1A0A087WYE8 117 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 SRIP30626 198 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 PLA2G5P39877 138 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 GNG4P50150 75 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 CCL7P80098 99 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 ETDBQ3ZM63 59 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 C5orf47Q569G3 176 aa9.15□□□□□ -0.95
CLK3-226ENST00000569406 ZNF501Q96CX3 271 aaPredicted RBP9.15□□□□□ -0.95
CLK3-226ENST00000569406 SPAG8Q99932 426 aaPredicted RBP9.15□□□□□ -0.95
CLK3-226ENST00000569406 FRG2CA6NGY1 282 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 M0R2Z0 102 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 VSIG8P0DPA2 414 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 MGST1P10620 155 aaKnown RBP9.14□□□□□ -0.95
CLK3-226ENST00000569406 UBE2G1P62253 170 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 C8orf86Q6ZUL3 223 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 YRDCQ86U90 279 aaKnown RBP9.14□□□□□ -0.95
CLK3-226ENST00000569406 LOC107986453A0A1B0GWG9 222 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 CEACAM18A8MTB9 384 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 C6orf15Q6UXA7 325 aaPredicted RBP9.14□□□□□ -0.95
CLK3-226ENST00000569406 LHFPL1Q86WI0 220 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 ADAT3Q96EY9 351 aaPredicted RBP9.14□□□□□ -0.95
CLK3-226ENST00000569406 A6NDN8 102 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 SLC22A20A6NK97 555 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 BGLAPP02818 100 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 CATR1Q13166 79 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 DCAF12Q5T6F0 453 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 ACP7Q6ZNF0 438 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 TMEM251Q8N6I4 163 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 OR5D13Q8NGL4 314 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 OR10D3Q8NH80 312 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 KCNG3Q8TAE7 436 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 TSKUQ8WUA8 353 aa9.14□□□□□ -0.95
CLK3-226ENST00000569406 TRAV25A0A0B4J276 109 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 F5H5K5 113 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 LMX1BO60663 402 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 PRTN3P24158 256 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 SLC35B1P78383 322 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 ROM1Q03395 351 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 TMEM97Q5BJF2 176 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 GLIPR1L1Q6UWM5 242 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 FAM57BQ71RH2 274 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 ZNF611Q8N823 705 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 C1orf162Q8NEQ5 155 aaPredicted RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 PPP1R35Q8TAP8 253 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 DAZLQ92904 295 aaKnown RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 CLDN23Q96B33 292 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 RAX2Q96IS3 184 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 TPPP3Q9BW30 176 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 CYSLTR1Q9Y271 337 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 UBE2J1Q9Y385 318 aaPredicted RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 LY6G6EA0A0G2JKS1 128 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 FAM90A27PA6NNH2 459 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 TMEM250H0YL14 139 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 RAD51DO75771 328 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 CRYAAP02489 173 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 MT-ATP8P03928 68 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 MRPL54Q6P161 138 aaKnown RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 EBLN2Q6P2I7 272 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 ARHGAP5-AS1Q96IT6 56 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 COMMD5Q9GZQ3 224 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 U3KQA8 63 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 CRYM-AS1A6NIL9 109 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 TNFRSF13BO14836 293 aaPredicted RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 PHF1O43189 567 aaPredicted RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 ANGPTL7O43827 346 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 LINC00869P0C866 280 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 TAS2R46P59540 309 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 SEC11AP67812 179 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 WFDC2Q14508 124 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 KIR3DS1Q14943 382 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 GCSAMLQ5JQS6 135 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 OR1F12Q8NHA8 337 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 DUSP23Q9BVJ7 150 aa9.13□□□□□ -0.95
CLK3-226ENST00000569406 NXT1Q9UKK6 140 aaKnown RBP9.13□□□□□ -0.95
CLK3-226ENST00000569406 A0A1W2PPM0 123 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 PAGE4O60829 102 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 CFPP27918 469 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 MDH2P40926 338 aaKnown RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 PLP2Q04941 152 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 ZNF766Q5HY98 468 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 PLAC9Q5JTB6 97 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 C16orf47Q6ZP98 133 aaPredicted RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 BPIFA4PQ86YQ2 179 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 NANOS1Q8WY41 292 aaKnown RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 RAB40CQ96S21 281 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 CITED2Q99967 270 aaPredicted RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 PIMREGQ9BSJ6 248 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms