RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 WASHC3Q9Y3C0 194 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 UFC1Q9Y3C8 167 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR51B4Q9Y5P0 310 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TRAPPC1Q9Y5R8 145 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 KIF24Q5T7B8 1368 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 PLCH2O75038 1416 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ATRNO75882 1429 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 NPATQ14207 1427 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CUL9Q8IWT3 2517 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CEP170Q5SW79 1584 aa0.78□□□□□ -2.29
VPS35-207ENST00000568191 LCTP09848 1927 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 EML6Q6ZMW3 1958 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TRPM6Q9BX84 2022 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TRAV26-2A0A0B4J265 109 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 A0A1B0GV50 99 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 hADV38S2A0JD32 116 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 VPS37CA5D8V6 355 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 F5H5P2 479 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 INMT-MINDY4F8WBC2 141 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TMEM250H0YL14 139 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ARPC5O15511 151 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SLC37A4O43826 429 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 PDE6DO43924 150 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MFSD11O43934 449 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TTRP02766 147 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 PPBPP02775 128 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SERPINA7P05543 415 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CRHP06850 196 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 FBP1P09467 338 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SULT1A3P0DMM9 295 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SULT1A4P0DMN0 295 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SCGB1C2P0DMR2 95 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 P0DMU3 169 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 FAM231AP0DMU4 169 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 FAM231CP0DMU5 169 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 FGF6P10767 208 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SCGB1A1P11684 91 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CTSEP14091 401 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 IDO1P14902 403 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CTLA4P16410 223 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CCL1P22362 96 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CRABP1P29762 137 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 HSPA9P38646 679 aaKnown RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 INPP1P49441 399 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 PSMB3P49720 205 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 NUDT2P50583 147 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 CTBP2P56545 445 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TCTAP57738 103 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 RHOBP62745 196 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 HERVK_113P63121 156 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 JOSD1Q15040 202 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 ELOCQ15369 112 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 IAH1Q2TAA2 248 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 CCDC58Q4VC31 144 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 C1orf194Q5T5A4 169 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ZNF322Q6U7Q0 402 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 SBSNQ6UWP8 590 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 DPPA2Q7Z7J5 298 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MARCH3Q86UD3 253 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OOSP2Q86WS3 158 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 C20orf196Q8IYI0 205 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 YIPF7Q8N8F6 280 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TMEM75Q8N9X5 138 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 Q8NAQ8 132 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ZNF555Q8NEP9 628 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR2M3Q8NG83 312 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR8B12Q8NGG6 310 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR10D4PQ8NGN7 298 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR13D1Q8NGV5 346 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR2T4Q8NH00 348 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR4K13Q8NH42 304 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 OR51H1Q8NH63 302 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 LHFPL5Q8TAF8 219 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SCGB1C1Q8TD33 95 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MAFIPQ8WZ33 124 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 BORCS5Q969J3 196 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 APOBEC3DQ96AK3 386 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 PPP1R2P1Q96PQ5 205 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 AIF1LQ9BQI0 150 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ANAPC13Q9BS18 74 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 THTPAQ9BU02 230 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ULBP3Q9BZM4 244 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 EIF5A2Q9GZV4 153 aaKnown RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 GTSF1LQ9H1H1 148 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MED28Q9H204 178 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 HES4Q9HCC6 221 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 C14orf105Q9NVL8 296 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TMEM216Q9P0N5 145 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SS18L2Q9UHA2 77 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 RSL24D1Q9UHA3 163 aaKnown RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 LINC00527Q9UJ94 153 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 PYCARDQ9ULZ3 195 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 UTP11Q9Y3A2 253 aaKnown RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 PCYT1BQ9Y5K3 369 aaPredicted RBP0.77□□□□□ -2.29
VPS35-207ENST00000568191 PXMP4Q9Y6I8 212 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 TMEM56-RWDD3S4R434 201 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 ARHGEF10O15013 1369 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 MIA2Q96PC5 1412 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 SETD5Q9C0A6 1442 aa0.77□□□□□ -2.29
VPS35-207ENST00000568191 YTHDC2Q9H6S0 1430 aaKnown RBP0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms