RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 J3QR06 171 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 ZNF207O43670 478 aaKnown RBP13.05□□□□□ -0.32
SHH-201ENST00000297261 MPDU1O75352 247 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 GZMHP20718 246 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 ZNF664Q8N3J9 261 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 IGKV1D-13A0A0B4J2D9 117 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 CORTO00230 105 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 IGKV1-13P0DP09 117 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 SLC25A34Q6PIV7 304 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 ZNF525Q8N782 197 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 C1QTNF9P0C862 333 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 FAM89BQ8N5H3 189 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 SLC25A40Q8TBP6 338 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 LSM10Q969L4 123 aaKnown RBP13.04□□□□□ -0.32
SHH-201ENST00000297261 ZNF837Q96EG3 531 aaPredicted RBP13.04□□□□□ -0.32
SHH-201ENST00000297261 VSIRQ9H7M9 311 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 FAM90A26D6RGX4 464 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 EFNA2O43921 213 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 OR4A8P0C604 315 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 SRSF4Q08170 494 aaKnown RBP13.04□□□□□ -0.32
SHH-201ENST00000297261 ZNF826PQ6ZT77 177 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 ZDHHC16Q969W1 377 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 NDFIP1Q9BT67 221 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 EGLN1Q9GZT9 426 aa13.04□□□□□ -0.32
SHH-201ENST00000297261 RELBQ01201 579 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 TFF3Q07654 80 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 VMA21Q3ZAQ7 101 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 C18orf12Q96KH6 178 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 OR8B2Q96RD0 313 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 LAMA2P24043 3122 aaKnown RBP13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A10PA6NDY2 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A18PA6NE21 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A16PA6NEW6 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A20PA6NIJ5 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A8PA6NJQ4 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A7PA6NKC0 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A22PA8MWA6 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A12PA8MX19 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A5PA8MXJ8 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A23PA8MXZ1 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A15PP0C7V4 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A13PP0C7W8 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A14PP0C7W9 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FAM90A24PP0C7X0 464 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 APELAP0DMC3 54 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 FOXA3P55318 350 aaPredicted RBP13.03□□□□□ -0.32
SHH-201ENST00000297261 SLC25A53Q5H9E4 307 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 HSPB8Q9UJY1 196 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 TMSB15BA0A087X1C1 80 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 MARCH11A6NNE9 402 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 NAPSAO96009 420 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 NMUP48645 174 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 ZNF83P51522 516 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 LYZP61626 148 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 LAMTOR2Q9Y2Q5 125 aa13.03□□□□□ -0.32
SHH-201ENST00000297261 CIDEAO60543 219 aa13.02□□□□□ -0.32
SHH-201ENST00000297261 CELA3AP09093 270 aa13.02□□□□□ -0.32
SHH-201ENST00000297261 FHL1Q13642 323 aa13.02□□□□□ -0.32
SHH-201ENST00000297261 VKORC1L1Q8N0U8 176 aa13.02□□□□□ -0.32
SHH-201ENST00000297261 WNT5BQ9H1J7 359 aa13.02□□□□□ -0.32
SHH-201ENST00000297261 CD55P08174 381 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 RPL11P62913 178 aaKnown RBP13.02□□□□□ -0.33
SHH-201ENST00000297261 RND1Q92730 232 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 SPSB4Q96A44 273 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 C2orf88Q9BSF0 95 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 NPCDR1Q9BY65 106 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 CHD7Q9P2D1 2997 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 CA2P00918 260 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 PLP1P60201 277 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 ID3Q02535 119 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 MMDQ15546 238 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 LINC00596Q86U02 117 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 CXXC4Q9H2H0 198 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 GNB4Q9HAV0 340 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 TECTAO75443 2155 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 IGLV3-32A0A0A0MS00 114 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 LOC389332A0A1B0GUA5 103 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 RRHO14718 337 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 DLEU1O43261 78 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 NUDT3O95989 172 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 SCGB1C2P0DMR2 95 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 RBPJQ06330 500 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 C10orf113Q5VZT2 155 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 MOB3BQ86TA1 216 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 GATAD1Q8WUU5 269 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 AAMDCQ9H7C9 122 aa13.02□□□□□ -0.33
SHH-201ENST00000297261 CADP27708 2225 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 SCO2A0A1W2PP80 73 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 CENPWQ5EE01 88 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 MDP1Q86V88 176 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 MRPL37Q9BZE1 423 aaKnown RBP13.01□□□□□ -0.33
SHH-201ENST00000297261 PRRG2O14669 202 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 OR4F17Q8NGA8 305 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 ZNF524Q96C55 264 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 IGHV3-21A0A0B4J1V1 117 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 ODAMA1E959 279 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 A8MWL6 223 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 EREGO14944 169 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 GZMBP10144 247 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 PTGDSP41222 190 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms