RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SRGAP3O43295 1099 aa21.98■■□□□ 1.11
COL7A1-205ENST00000465238 MLLT1Q03111 559 aaPredicted RBP21.98■■□□□ 1.11
COL7A1-205ENST00000465238 CTU1Q7Z7A3 348 aaKnown RBP21.98■■□□□ 1.11
COL7A1-205ENST00000465238 KLHDC4Q8TBB5 520 aa21.98■■□□□ 1.11
COL7A1-205ENST00000465238 C1orf115Q9H7X2 142 aa21.98■■□□□ 1.11
COL7A1-205ENST00000465238 VEZTQ9HBM0 779 aa21.98■■□□□ 1.11
COL7A1-205ENST00000465238 SERPINA10Q9UK55 444 aa21.98■■□□□ 1.11
COL7A1-205ENST00000465238 SSC5DA1L4H1 1573 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 UNCXA6NJT0 531 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 RFX5P48382 616 aaPredicted RBP21.97■■□□□ 1.11
COL7A1-205ENST00000465238 MKRN3Q13064 507 aaKnown RBP21.97■■□□□ 1.11
COL7A1-205ENST00000465238 MTX1Q13505 466 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 METTL24Q5JXM2 366 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 SPRYD7Q5W111 196 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 VPS37DQ86XT2 251 aa21.97■■□□□ 1.11
COL7A1-205ENST00000465238 TTF2Q9UNY4 1162 aaKnown RBP21.97■■□□□ 1.11
COL7A1-205ENST00000465238 TBC1D8O95759 1140 aa21.96■■□□□ 1.11
COL7A1-205ENST00000465238 LRRC24Q50LG9 513 aa21.96■■□□□ 1.11
COL7A1-205ENST00000465238 NOM1Q5C9Z4 860 aaKnown RBP21.96■■□□□ 1.11
COL7A1-205ENST00000465238 FBXO33Q7Z6M2 555 aa21.96■■□□□ 1.11
COL7A1-205ENST00000465238 SLC10A4Q96EP9 437 aa21.96■■□□□ 1.11
COL7A1-205ENST00000465238 FZD1Q9UP38 647 aa21.96■■□□□ 1.11
COL7A1-205ENST00000465238 PDE8BO95263 885 aa21.95■■□□□ 1.1
COL7A1-205ENST00000465238 ATP8B2P98198 1209 aa21.95■■□□□ 1.1
COL7A1-205ENST00000465238 TNFAIP1Q13829 316 aa21.95■■□□□ 1.1
COL7A1-205ENST00000465238 CAVIN4Q5BKX8 364 aa21.95■■□□□ 1.1
COL7A1-205ENST00000465238 AOX1Q06278 1338 aa21.95■■□□□ 1.1
COL7A1-205ENST00000465238 EYA2O00167 538 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 INHBEP58166 350 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 RASA3Q14644 834 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 SPDYE2Q495Y8 402 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 NBPF12Q5TAG4 269 aaPredicted RBP21.94■■□□□ 1.1
COL7A1-205ENST00000465238 VGLL2Q8N8G2 317 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 ZNF296Q8WUU4 475 aaPredicted RBP21.94■■□□□ 1.1
COL7A1-205ENST00000465238 CFHR5Q9BXR6 569 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 ZBTB40Q9NUA8 1239 aa21.94■■□□□ 1.1
COL7A1-205ENST00000465238 MANSC4A6NHS7 340 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-205ENST00000465238 ZBTB48P10074 688 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-205ENST00000465238 TBC1D22AQ8WUA7 517 aa21.93■■□□□ 1.1
COL7A1-205ENST00000465238 SIL1Q9H173 461 aa21.93■■□□□ 1.1
COL7A1-205ENST00000465238 COPRSQ9NQ92 184 aa21.93■■□□□ 1.1
COL7A1-205ENST00000465238 ZNF70Q9UC06 446 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-205ENST00000465238 FBXO3Q9UK99 471 aa21.93■■□□□ 1.1
COL7A1-205ENST00000465238 SUPT16HQ9Y5B9 1047 aaKnown RBP21.93■■□□□ 1.1
COL7A1-205ENST00000465238 PNMA6EA0A0J9YXQ4 647 aa21.92■■□□□ 1.1
COL7A1-205ENST00000465238 GPR25O00155 361 aa21.92■■□□□ 1.1
COL7A1-205ENST00000465238 FRAT2O75474 233 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 ALDH1A1P00352 501 aa21.92■■□□□ 1.1
COL7A1-205ENST00000465238 IREB2P48200 963 aaKnown RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 PKN2Q16513 984 aaKnown RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 TDRD3Q9H7E2 651 aaKnown RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 IQSEC3Q9UPP2 1182 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 PA2G4Q9UQ80 394 aaKnown RBP21.92■■□□□ 1.1
COL7A1-205ENST00000465238 LAMB1P07942 1786 aa21.92■■□□□ 1.1
COL7A1-205ENST00000465238 CIAO1O76071 339 aa21.91■■□□□ 1.1
COL7A1-205ENST00000465238 CRKP46108 304 aa21.91■■□□□ 1.1
COL7A1-205ENST00000465238 HDLBPQ00341 1268 aaKnown RBP21.91■■□□□ 1.1
COL7A1-205ENST00000465238 WNK4Q96J92 1243 aa21.91■■□□□ 1.1
COL7A1-205ENST00000465238 CLMNQ96JQ2 1002 aa21.91■■□□□ 1.1
COL7A1-205ENST00000465238 USP2O75604 605 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-205ENST00000465238 IFIT1P09914 478 aaKnown RBP21.9■■□□□ 1.1
COL7A1-205ENST00000465238 IL15P40933 162 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-205ENST00000465238 CHAF1AQ13111 956 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-205ENST00000465238 PUM3Q15397 648 aaKnown RBP21.9■■□□□ 1.1
COL7A1-205ENST00000465238 ANKRD13AQ8IZ07 590 aa21.9■■□□□ 1.1
COL7A1-205ENST00000465238 SSH3Q8TE77 659 aa21.9■■□□□ 1.1
COL7A1-205ENST00000465238 TNNI2P48788 182 aa21.89■■□□□ 1.09
COL7A1-205ENST00000465238 POLA2Q14181 598 aa21.89■■□□□ 1.09
COL7A1-205ENST00000465238 CEP85Q6P2H3 762 aa21.89■■□□□ 1.09
COL7A1-205ENST00000465238 ATG9AQ7Z3C6 839 aa21.89■■□□□ 1.09
COL7A1-205ENST00000465238 RPAP2Q8IXW5 612 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-205ENST00000465238 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.89■■□□□ 1.09
COL7A1-205ENST00000465238 FKTNO75072 461 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 FGFR2P21802 821 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 BCAMP50895 628 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 G3BP1Q13283 466 aaKnown RBP eCLIP21.88■■□□□ 1.09
COL7A1-205ENST00000465238 GRIK5Q16478 980 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 IFNL1Q8IU54 200 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 CEP126Q9P2H0 1117 aa21.88■■□□□ 1.09
COL7A1-205ENST00000465238 TEKT1Q969V4 418 aa21.87■■□□□ 1.09
COL7A1-205ENST00000465238 TEPSINQ96N21 525 aa21.87■■□□□ 1.09
COL7A1-205ENST00000465238 CRBNQ96SW2 442 aa21.87■■□□□ 1.09
COL7A1-205ENST00000465238 MRIQ9BWK5 157 aa21.87■■□□□ 1.09
COL7A1-205ENST00000465238 SUGT1Q9Y2Z0 365 aa21.87■■□□□ 1.09
COL7A1-205ENST00000465238 MAST3O60307 1309 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 TCP10L2B9ZVM9 353 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 R3HDMLQ9H3Y0 253 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 HPS5Q9UPZ3 1129 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 OTOFQ9HC10 1997 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 TNRC18O15417 2968 aaPredicted RBP21.86■■□□□ 1.09
COL7A1-205ENST00000465238 MYH13Q9UKX3 1938 aa21.86■■□□□ 1.09
COL7A1-205ENST00000465238 HMMRO75330 724 aa21.85■■□□□ 1.09
COL7A1-205ENST00000465238 SURF6O75683 361 aaKnown RBP21.85■■□□□ 1.09
COL7A1-205ENST00000465238 SLC5A1P13866 664 aa21.85■■□□□ 1.09
COL7A1-205ENST00000465238 LPIN2Q92539 896 aa21.85■■□□□ 1.09
COL7A1-205ENST00000465238 IGF2BP3O00425 579 aaKnown RBP eCLIP21.84■■□□□ 1.09
COL7A1-205ENST00000465238 SOX10P56693 466 aa21.84■■□□□ 1.09
COL7A1-205ENST00000465238 OS9Q13438 667 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-205ENST00000465238 OTUD7BQ6GQQ9 843 aa21.84■■□□□ 1.09
COL7A1-205ENST00000465238 ZDHHC15Q96MV8 337 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms