RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF716A6NP11 495 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 FTH1P19P0C7X4 201 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 CD81P60033 236 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 KCNMB1Q16558 191 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF658BQ4V348 819 aaPredicted RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 GCSAMQ8N6F7 178 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 PI4KAP42356 2102 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 A8MWL6 223 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 DNASE2O00115 360 aaPredicted RBP11.97□□□□□ -0.49
CPSF1-212ENST00000616140 SSTR5P35346 364 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 SELENOTP62341 195 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 TMEM54Q969K7 222 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 GDF9O60383 454 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 EGR1P18146 543 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 IBA57Q5T440 356 aaKnown RBP11.97□□□□□ -0.49
CPSF1-212ENST00000616140 STPG1Q5TH74 334 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 GALNT14Q96FL9 552 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 GDF15Q99988 308 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 TCF19Q9Y242 345 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 XIRP1Q702N8 1843 aaKnown RBP11.97□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF236Q9UL36 1845 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 hCG_38984A0A1B0GV85 526 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 PTGDSP41222 190 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 PPOXP50336 477 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 LINC00518Q8N0U6 118 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 VKORC1L1Q8N0U8 176 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 TMEM208Q9BTX3 173 aa11.97□□□□□ -0.49
CPSF1-212ENST00000616140 A8MXK9 166 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 CELA3AP09093 270 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 HOXB1P14653 301 aaPredicted RBP11.96□□□□□ -0.49
CPSF1-212ENST00000616140 RND2P52198 227 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 C1orf185Q5T7R7 199 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 ATRAIDQ6UW56 229 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 PRR7Q8TB68 274 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 SNRNP40Q96DI7 357 aaKnown RBP11.96□□□□□ -0.49
CPSF1-212ENST00000616140 RTN4RQ9BZR6 473 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 FER1L5A0AVI2 2057 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 SLC25A17O43808 307 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 LTBRP36941 435 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 ECSCRQ19T08 205 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 PRNTQ86SH4 94 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 LSM10Q969L4 123 aaKnown RBP11.96□□□□□ -0.49
CPSF1-212ENST00000616140 PARLQ9H300 379 aa11.96□□□□□ -0.49
CPSF1-212ENST00000616140 MT-ND6P03923 174 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 AGAP20933 346 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 DOLPP1Q86YN1 238 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 OR8A1Q8NGG7 326 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 TIMP4Q99727 224 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 HIGD1AQ9Y241 93 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 HILPDAQ9Y5L2 63 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 CCL21O00585 134 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 MC5RP33032 325 aa11.96□□□□□ -0.5
CPSF1-212ENST00000616140 SUCLG1P53597 346 aaKnown RBP11.96□□□□□ -0.5
CPSF1-212ENST00000616140 DICER1Q9UPY3 1922 aaKnown RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 TRAV14DV4A0A0A6YYC5 116 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 PGPA6NDG6 321 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 CXorf65A6NEN9 183 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 M0QZK8 103 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 GGCTO75223 188 aaKnown RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 TMEM97Q5BJF2 176 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF385CQ66K41 422 aaPredicted RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 SMIM8Q96KF7 97 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 TM2D1Q9BX74 207 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 USF3Q68DE3 2245 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 DOCK4Q8N1I0 1966 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 WNT9BO14905 357 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 LYPD3O95274 346 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 SRP14P37108 136 aaKnown RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 GAS1P54826 345 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 OR1P1Q8NH06 330 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 RCC1LQ96I51 464 aaKnown RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 RTBDNQ9BSG5 229 aaPredicted RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 ELOVL1Q9BW60 279 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 ZMAT5Q9UDW3 170 aaKnown RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 DLL1O00548 723 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 ARL14EPLP0DKL9 152 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 IGFBP3P17936 291 aaPredicted RBP11.95□□□□□ -0.5
CPSF1-212ENST00000616140 FGF11Q92914 225 aa11.95□□□□□ -0.5
CPSF1-212ENST00000616140 RHBDL1O75783 438 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 IGHV3-48P01763 117 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 RPL7P18124 248 aaKnown RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 ZNRF1Q8ND25 227 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 OR5P3Q8WZ94 311 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SIGLEC12Q96PQ1 595 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 TNFRSF19Q9NS68 423 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SYNGR3O43761 229 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 TRGC1P0CF51 173 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 CD99P14209 185 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 RPL24P83731 157 aaKnown RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SLC25A53Q5H9E4 307 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 MMD2Q8IY49 270 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 GBGT1Q8N5D6 347 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 FLVCR1-AS1Q8TAF5 88 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 PRDM6Q9NQX0 595 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 PROB1E7EW31 1015 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 PAFAH1B2P68402 229 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 EFNB1P98172 346 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 KIAA1644Q3SXP7 199 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SLC35E4Q6ICL7 350 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms