RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FAM120AOSQ5T036 256 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CST9Q5W186 159 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM205Q6UW68 189 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TEX43Q6ZNM6 134 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ANKRD37Q7Z713 158 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TMED4Q7Z7H5 227 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 C20orf196Q8IYI0 205 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CLECL1Q8IZS7 167 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 COX18Q8N8Q8 333 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 STXBP6Q8NFX7 210 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR2T33Q8NG76 320 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 GPR32P1Q8NGA4 272 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR9K2Q8NGE7 335 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR13C4Q8NGS5 318 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SYNPRQ8TBG9 265 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 LGALS14Q8TCE9 139 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SFXN5Q8TD22 340 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CASTOR1Q8WTX7 329 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 Q8WTZ3 238 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 FRZBQ92765 325 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 GHSRQ92847 366 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 MAL2Q969L2 176 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RPUSD4Q96CM3 377 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM19Q96E16 107 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 NEURL3Q96EH8 262 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TVP23CQ96ET8 276 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CPNE2Q96FN4 548 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF514Q96K75 400 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 C4orf36Q96KX1 117 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PRRC1Q96M27 445 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 AMDHD1Q96NU7 426 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TP53RKQ96S44 253 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SLC35A5Q9BS91 424 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 FAAP24Q9BTP7 215 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PARD6GQ9BYG4 376 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR2J1Q9GZK6 312 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CHST6Q9GZX3 395 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PCBD2Q9H0N5 130 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 VCX2Q9H322 139 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR51I1Q9H343 314 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TAF9BQ9HBM6 251 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 BCL2L10Q9HD36 194 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 RAB18Q9NP72 206 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 MRPL27Q9P0M9 148 aaKnown RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 VPS29Q9UBQ0 182 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 OR5V1Q9UGF6 321 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SMPXQ9UHP9 88 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF230Q9UIE0 474 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-208ENST00000559119 SLC7A11Q9UPY5 501 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ARL5AQ9Y689 179 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 V9GY05 133 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 TSC2P49815 1807 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PARP14Q460N5 1801 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 PATJQ8NI35 1801 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 ANKRD36A6QL64 1941 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 CITO14578 2027 aa2.05□□□□□ -2.08
VPS13C-208ENST00000559119 A0A087WUU8 490 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM235A6NFC5 223 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CEACAM18A8MTB9 384 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF705GA8MUZ8 300 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 FTCDNL1E5RQL4 147 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 F6UZH7 168 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 H3BQ15 152 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CLDN34H7C241 214 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 K7ERU9 68 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 PIRO00625 290 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CDIPTO14735 213 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 HSD17B6O14756 317 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CYB5BO43169 146 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 DUX1O43812 170 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SOX15O60248 233 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 YPEL1O60688 119 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CTAG2O75638 210 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR2J2O76002 312 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 LRATO95237 230 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CYB5R3P00387 301 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CSTAP01040 98 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 C1QCP02747 245 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TYMSP04818 313 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 DCNP07585 359 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR4A8P0C604 315 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OR8U9P0C7N5 309 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM10L2AP0DMW4 78 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 SMIM10L2BP0DMW5 78 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ESDP10768 282 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 GTF2F2P13984 249 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF7P17097 686 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 GNRHRP30968 328 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TAGLN2P37802 199 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 OPRD1P41143 372 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 AKR1C3P42330 323 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 NSG1P42857 185 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 ARRB1P49407 418 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 NOVA1P51513 510 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 POLR2HP52434 150 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 CRYBB1P53674 252 aaPredicted RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM33P57088 247 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 UBE2KP61086 200 aa2.04□□□□□ -2.08
VPS13C-208ENST00000559119 UBE2NP61088 152 aaKnown RBP2.04□□□□□ -2.08
VPS13C-208ENST00000559119 RPL8P62917 257 aaKnown RBP2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms