RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PPIAL4DF5H284 164 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 KISS1Q15726 138 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 LRRC75BQ2VPJ9 315 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 WFDC3Q8IUB2 231 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 THYN1Q9P016 225 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 CACNG5Q9UF02 275 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 ST3GAL6Q9Y274 331 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 KLHDC2Q9Y2U9 406 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 LIPT2A6NK58 231 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 C4orf51C9J302 202 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 DHHO43323 396 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 FLVCR1-AS1Q8TAF5 88 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 GPR146Q96CH1 333 aa5.55□□□□□ -1.52
VPS35-201ENST00000299138 C3orf85A0A1B0GTC6 90 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 METTL12A8MUP2 240 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 HBZP02008 142 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 COX5BP10606 129 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 MPLP40238 635 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 RPS23P62266 143 aaKnown RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 MEF2BQ02080 365 aaPredicted RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 FAM53AQ6NSI3 398 aaPredicted RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 TRAV5A0A0B4J249 113 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 DPRXA6NFQ7 191 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 CT62P0C5K7 136 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 ADCYAP1P18509 176 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 RPS27P42677 84 aaKnown RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 HOXA4Q00056 320 aaPredicted RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 EWSR1Q01844 656 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS35-201ENST00000299138 FBXL14Q8N1E6 418 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 OR4D5Q8NGN0 318 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 OR10D3Q8NH80 312 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 OR2V1Q8NHB1 315 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 H0Y980 276 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 SRIP30626 198 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 C2orf68Q2NKX9 166 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 RIPPLY2Q5TAB7 128 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 Q96M66 194 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 KIAA1671Q9BY89 1806 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 TMEM189A5PLL7 270 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 IGLV3-19P01714 112 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 SRP19P09132 144 aaKnown RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 TRGC1P0CF51 173 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 SSBP2P81877 361 aaPredicted RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 SSPNQ14714 243 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 SLC25A47Q6Q0C1 308 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 RFLNBQ8N5W9 214 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 CYB561D1Q8N8Q1 229 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 OR10AC1Q8NH08 325 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 KCNE4Q8WWG9 221 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 NGBQ9NPG2 151 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 PLXNA2O75051 1894 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 CTXND1A0A1B0GTU2 59 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 KLK2P20151 261 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 HIST1H1AQ02539 215 aaPredicted RBP5.54□□□□□ -1.52
VPS35-201ENST00000299138 TMEM187Q14656 261 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 TMEM170BQ5T4T1 132 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 FOXL2NBQ6ZUU3 175 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 FADS6Q8N9I5 356 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 PRELID3AQ96N28 172 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 C18orf15Q96N68 181 aa5.54□□□□□ -1.52
VPS35-201ENST00000299138 H0YIZ8 118 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 IGHV3-13P01766 116 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 IGHV3-7P01780 117 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 SPINK8P0C7L1 97 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 DLX6P56179 175 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 C20orf196Q8IYI0 205 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PHLDA1Q8WV24 401 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 TNFRSF19Q9NS68 423 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PPIAL4EA0A075B759 164 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 H3BMH7 237 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PPIAL4FP0DN26 164 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 NXPH1P58417 271 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 EGR4Q05215 589 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 OSR2Q8N2R0 312 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PAQR4Q8N4S7 273 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 TTC9CQ8N5M4 171 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 ARHGAP5-AS1Q96IT6 56 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 KCNS1Q96KK3 526 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 ZNF665Q9H7R5 613 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 PPIAL4AQ9Y536 164 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 hADV38S2A0JD32 116 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 UNC119Q13432 240 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 MRPL30Q8TCC3 161 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 SLC37A2Q8TED4 501 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PTPMT1Q8WUK0 201 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 PYGO2Q9BRQ0 406 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 GEMIN7Q9H840 131 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 ASCL3Q9NQ33 180 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 LY96Q9Y6Y9 160 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 CENPVL1A0A0U1RR11 272 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 TMEM252Q8N6L7 170 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 RTBDNQ9BSG5 229 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 NHP2Q9NX24 153 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 TRBV6-6A0A0A6YYG2 114 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 IGKV1D-16P01601 117 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 GAGE1Q13065 139 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 FXYD3Q14802 87 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 FAM27BQ5VT28 67 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms