RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CCL13Q99616 98 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 RSPO3Q9BXY4 272 aaPredicted RBP10.98□□□□□ -0.65
USP40-201ENST00000251722 IGKV3D-11A0A0A0MRZ8 115 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 PPIAL4CA0A0B4J2A2 164 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 SNURFLB1AK76 121 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 TM4SF5O14894 197 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 CHST1O43916 411 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 CELA2AP08217 269 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 PPIAL4GP0DN37 164 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 LOXL3P58215 753 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 DSCR9P59020 149 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 C1orf100Q5SVJ3 147 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 TPTE2P1Q5T6R2 138 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 RNASE6Q93091 150 aaKnown RBP10.98□□□□□ -0.65
USP40-201ENST00000251722 AUP1Q9Y679 476 aa10.98□□□□□ -0.65
USP40-201ENST00000251722 FCGR3AP08637 254 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 MNX1P50219 401 aaPredicted RBP10.97□□□□□ -0.65
USP40-201ENST00000251722 DGAT2L7PQ6IED9 249 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 OR52E5Q8NH55 327 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 P2RX4Q99571 388 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 LOC102723996A0A087X1L8 192 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 TMEM229AB2RXF0 380 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 TMEM238C9JI98 176 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 AGAP20933 346 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 SPNS2Q8IVW8 549 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 FDCSPQ8NFU4 85 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 IGHV3OR15-7A0A075B7D8 119 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 PAX2Q02962 417 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 ECSCRQ19T08 205 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 SLC25A53Q5H9E4 307 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 CLEC7AQ9BXN2 247 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 CASP8AP2Q9UKL3 1982 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 NEURL1O76050 574 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 APCSP02743 223 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 OCIAD2Q56VL3 154 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 FAM71F2Q6NXP2 309 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 WDFY1Q8IWB7 410 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 PNKDQ8N490 385 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 OR4X1Q8NH49 305 aa10.97□□□□□ -0.65
USP40-201ENST00000251722 TRBV9A0A0B4J1U6 114 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 J3KRW8 73 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 HYPMO75409 117 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 HBZP02008 142 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 PIGYQ3MUY2 71 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 H1FOOQ8IZA3 346 aaPredicted RBP10.96□□□□□ -0.65
USP40-201ENST00000251722 C5orf30Q96GV9 206 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 NRTNQ99748 197 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 RALGAPA2Q2PPJ7 1873 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 DOCK5Q9H7D0 1870 aa10.96□□□□□ -0.65
USP40-201ENST00000251722 A0A1W2PRD5 423 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 A0A1W2PRF3 423 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 A0A1W2PRM7 423 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 OR2H2O95918 312 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 WDR25Q64LD2 544 aaPredicted RBP10.96□□□□□ -0.66
USP40-201ENST00000251722 KLF14Q8TD94 323 aaPredicted RBP10.96□□□□□ -0.66
USP40-201ENST00000251722 SLC25A22Q9H936 323 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 ODAMA1E959 279 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 DYNLT3P51808 116 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 DMRTC1Q5HYR2 192 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 MRPL54Q6P161 138 aaKnown RBP10.96□□□□□ -0.66
USP40-201ENST00000251722 MRPL14Q6P1L8 145 aaKnown RBP10.96□□□□□ -0.66
USP40-201ENST00000251722 ASCL4Q6XD76 172 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 OR4A5Q8NH83 315 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 CALYQ9NYX4 217 aa10.96□□□□□ -0.66
USP40-201ENST00000251722 LMX1BO60663 402 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 TNFSF13O75888 250 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 SYT8Q8NBV8 401 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.95□□□□□ -0.66
USP40-201ENST00000251722 DPRXA6NFQ7 191 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 ZNF708P17019 499 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 LSM11P83369 360 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP40-201ENST00000251722 MGAT2Q10469 447 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 NPVFQ9HCQ7 196 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 SS18L1O75177 396 aaPredicted RBP10.95□□□□□ -0.66
USP40-201ENST00000251722 AREGP15514 252 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 SERF2P84101 59 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 MRAP2Q96G30 205 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 C19orf24Q9BVV8 132 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 CTXND1A0A1B0GTU2 59 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 A0A1B0GWB2 263 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 PITX3O75364 302 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 S1PR2O95136 353 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 HERVK_113P61574 105 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 C19orf48Q6RUI8 117 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 CYB561D1Q8N8Q1 229 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 SPANXCQ9NY87 97 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 MFAP4P55083 255 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 RPL8P62917 257 aaKnown RBP10.95□□□□□ -0.66
USP40-201ENST00000251722 TGIF1Q15583 401 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 COPS9Q8WXC6 57 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 TNFRSF19Q9NS68 423 aa10.95□□□□□ -0.66
USP40-201ENST00000251722 EFNB1P98172 346 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 CXorf66Q5JRM2 361 aaPredicted RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 PSMG4Q5JS54 123 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 HIST3H2BBQ8N257 126 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 GVQW1Q8N7I0 195 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 FADS6Q8N9I5 356 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 OR4P4Q8NGL7 312 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 OR10AC1Q8NH08 325 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 IMMP1LQ96LU5 166 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms