RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 LILRB1Q8NHL6 650 aaPredicted RBP13.12□□□□□ -0.31
CIITA-204ENST00000570546 MRPL13Q9BYD1 178 aaKnown RBP13.12□□□□□ -0.31
CIITA-204ENST00000570546 PQLC2LA1A4F0 135 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 MAP1LC3CQ9BXW4 147 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 PLXNA3P51805 1871 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 TDRD6O60522 2096 aaKnown RBP13.12□□□□□ -0.31
CIITA-204ENST00000570546 MARCH11A6NNE9 402 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 FAM209BQ5JX69 171 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 BIVMQ86UB2 503 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 ITLN1Q8WWA0 313 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 PPIAL4EA0A075B759 164 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 PPIAL4DF5H284 164 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 PPIAL4FP0DN26 164 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 TGIF1Q15583 401 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 PPIAL4AQ9Y536 164 aa13.12□□□□□ -0.31
CIITA-204ENST00000570546 GCGP01275 180 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 ZNF714Q96N38 554 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 TMEM140Q9NV12 185 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 IGHV3-21A0A0B4J1V1 117 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 ODAMA1E959 279 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 DIRC3C9JPN6 131 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 CCL8P80075 99 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 TMEM97Q5BJF2 176 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 ZNF385CQ66K41 422 aaPredicted RBP13.11□□□□□ -0.31
CIITA-204ENST00000570546 PSMG3Q9BT73 122 aaPredicted RBP13.11□□□□□ -0.31
CIITA-204ENST00000570546 METTL1Q9UBP6 276 aaKnown RBP13.11□□□□□ -0.31
CIITA-204ENST00000570546 FBLN5Q9UBX5 448 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 NAGKQ9UJ70 344 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 OR4A8P0C604 315 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 BRS3P32247 399 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 C5orf17Q8NAS9 161 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 UNC13CQ8NB66 2214 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 CEACAM18A8MTB9 384 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 J3QR89 54 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 RHOVQ96L33 236 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 COA4Q9NYJ1 87 aa13.11□□□□□ -0.31
CIITA-204ENST00000570546 TRGC1P0CF51 173 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 GPR61Q9BZJ8 451 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 MS4A5Q9H3V2 200 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 AKIRIN1Q9H9L7 192 aaPredicted RBP13.1□□□□□ -0.31
CIITA-204ENST00000570546 CALYQ9NYX4 217 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 ARL14EPLP0DKL9 152 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 HOXB1P14653 301 aaPredicted RBP13.1□□□□□ -0.31
CIITA-204ENST00000570546 SLC35B1P78383 322 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 CALHM1Q8IU99 346 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 SPTBP11277 2137 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 BMPR1BO00238 502 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 NPIPB7O75200 414 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 ZNF837Q96EG3 531 aaPredicted RBP13.1□□□□□ -0.31
CIITA-204ENST00000570546 PARLQ9H300 379 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 NKX2-8O15522 239 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 ZNF25P17030 456 aaPredicted RBP13.1□□□□□ -0.31
CIITA-204ENST00000570546 PAQR4Q8N4S7 273 aaPredicted RBP13.1□□□□□ -0.31
CIITA-204ENST00000570546 PLSCR2Q9NRY7 297 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 WASHC3Q9Y3C0 194 aa13.1□□□□□ -0.31
CIITA-204ENST00000570546 AHRRA9YTQ3 701 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 FAM87AP0C7U9 286 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 MPZP25189 248 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 HIGD1AQ9Y241 93 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 NAT2P11245 290 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 MST1P26927 711 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 OR8I2Q8N0Y5 310 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 LYZL4Q96KX0 146 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 HSPB9Q9BQS6 159 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 PTGDSP41222 190 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 ZNF441Q8N8Z8 693 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 HEXA-AS1Q9H8Q6 139 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 JPT1Q9UK76 154 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 A0A0G2JMM0 328 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 A0A1W2PPB8 328 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 A0A1W2PRS3 328 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 KIR3DP1A8MWS1 328 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 KBTBD11O94819 623 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 AGAP20933 346 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 ZNF137PP52743 207 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 IBA57Q5T440 356 aaKnown RBP13.09□□□□□ -0.31
CIITA-204ENST00000570546 Q8WTZ3 238 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 C1QTNF5Q9BXJ0 243 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 GBF1Q92538 1859 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 CCL1P22362 96 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 MFAP2P55001 183 aa13.09□□□□□ -0.31
CIITA-204ENST00000570546 LBHQ53QV2 105 aaPredicted RBP13.09□□□□□ -0.31
CIITA-204ENST00000570546 IGKV1-9A0A0C4DH69 117 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 HYPMO75409 117 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 MT-ND6P03923 174 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 SRSF3P84103 164 aaKnown RBP13.08□□□□□ -0.32
CIITA-204ENST00000570546 ZNF703Q9H7S9 590 aaPredicted RBP13.08□□□□□ -0.32
CIITA-204ENST00000570546 RPRMQ9NS64 109 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 IDI2-AS1Q9NZ38 188 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 F8VVB4 439 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 F8VWA3 439 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 DLL1O00548 723 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 UCP1P25874 307 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 LTBRP36941 435 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 FAM222BQ8WU58 562 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 DIRC2Q96SL1 478 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 IGLV3-12A0A075B6K2 115 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 CELA3AP09093 270 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 LINC00869P0C866 280 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 C18orf12Q96KH6 178 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms