RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LSM10Q969L4 123 aaKnown RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 MEGF10Q96KG7 1140 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 LINC01587Q99440 93 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 FAM208AQ9UK61 1670 aaKnown RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 TRAV8-7A0A075B6U6 113 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 ANKRD20A5PA0PJZ0 165 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 LNP1A1A4G5 178 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 IL4P05112 153 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 HSPE1P61604 102 aaKnown RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 OR51G1Q8NGK1 321 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 PGPEP1Q9NXJ5 209 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 PEMTQ9UBM1 199 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 ST6GALNAC2Q9UJ37 374 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 ZIC3O60481 467 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 ASAH2BP0C7U1 165 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 HDHD3Q9BSH5 251 aaPredicted RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 PKDREJQ9NTG1 2253 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 ZNF729A6NN14 1252 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 B4DEV8 164 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 CA2P00918 260 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SMIM18P0DKX4 95 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SNRPEP62304 92 aaKnown RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 C10orf128Q5T292 105 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 C11orf44Q8N8P7 122 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 TMEM45BQ96B21 275 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 ABHD1Q96SE0 405 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 NAV1Q8NEY1 1877 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 FOXI3A8MTJ6 420 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 NPIPB4C9JG80 1138 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 REG1AP05451 166 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 ERASQ7Z444 233 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SPRED2Q7Z698 418 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 MSRB3Q8IXL7 192 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SRSF12Q8WXF0 261 aaKnown RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 ALKBH7Q9BT30 221 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 ZNF703Q9H7S9 590 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 DNAJC4Q9NNZ3 241 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 GPR179Q6PRD1 2367 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 CRYBG1Q9Y4K1 1723 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 OGG1O15527 345 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 FCGR3AP08637 254 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 HOXA6P31267 233 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 FAM27E3Q08E93 113 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 FOXC2Q99958 501 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SSBP3Q9BWW4 388 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 PRSS22Q9GZN4 317 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 A0A0U1RQV5 110 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 RECKO95980 971 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 CRYBB2P43320 205 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 SERF2P84101 59 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 ZXDCQ2QGD7 858 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 TMEM177Q53S58 311 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 IBA57Q5T440 356 aaKnown RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 LEAP2Q969E1 77 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 HIST1H4GQ99525 98 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 WNT5BQ9H1J7 359 aa6.19□□□□□ -1.42
UPF2-203ENST00000397053 BEX4Q9NWD9 120 aaPredicted RBP6.19□□□□□ -1.42
UPF2-203ENST00000397053 H3BTX0 84 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 GLRXP35754 106 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 TMEM30BQ3MIR4 351 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 AWAT1Q58HT5 328 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 LIMS2Q7Z4I7 341 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 OR13A1Q8NGR1 328 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 CLDND2Q8NHS1 167 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 SP7Q8TDD2 431 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 TMEM106BQ9NUM4 274 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 EFEMP2O95967 443 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 IGHV3-11P01762 117 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 CRPP02741 224 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 ZNF25P17030 456 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 MALP21145 153 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 ATP6V0CP27449 155 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 DLK1P80370 383 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 TIMM23BQ5SRD1 257 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 RIPPLY2Q5TAB7 128 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 DTX4Q9Y2E6 619 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 ABCA7Q8IZY2 2146 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 M0R381 172 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 HKR1P10072 659 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 PPP1R32Q7Z5V6 425 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 HOGA1Q86XE5 327 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 DNASE2BQ8WZ79 361 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 MARVELD3Q96A59 401 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 FAM131CQ96AQ9 280 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 PKIBQ9C010 78 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 TTC28Q96AY4 2481 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 DOCK7Q96N67 2140 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 N4BP2Q86UW6 1770 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 SCN9AQ15858 1988 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 LOC101059948A0A1B0GTJ6 334 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 GHRHP01286 108 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 IGHV3-48P01763 117 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 C8orf88P0DMB2 117 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 MYOD1P15172 320 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 MUC1P15941 1255 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 CDKN1AP38936 164 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 CD69Q07108 199 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.18□□□□□ -1.42
UPF2-203ENST00000397053 TMEM170BQ5T4T1 132 aa6.18□□□□□ -1.42
UPF2-203ENST00000397053 STHQ8IWL8 128 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms