RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 C2orf91Q6ZV80 131 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 LRRC34Q8IZ02 419 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 OR11H2Q8NH07 326 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 FNDC9Q8TBE3 224 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 EEF1AKMT1Q8WVE0 214 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.87□□□□□ -2.27
VPS13A-206ENST00000376646 ATG2BQ96BY7 2078 aa0.87□□□□□ -2.27
VPS13A-206ENST00000376646 CUL9Q8IWT3 2517 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 TEX50A0A1B0GTY4 177 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 MDFIC2A0A1B0GVS7 189 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 C5orf49A4QMS7 147 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 FNDC10F2Z333 226 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 UBFD1O14562 309 aaKnown RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 UBE2L6O14933 153 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 PFDN6O15212 129 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 SSNA1O43805 119 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 REG1AP05451 166 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 P0DMU3 169 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 FAM231AP0DMU4 169 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 FAM231CP0DMU5 169 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 CDC34P49427 236 aaPredicted RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 CTBP2P56545 445 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 TMEM33P57088 247 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 SAPCD1Q5SSQ6 148 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 AMTNQ6UX39 209 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 Q8N402 240 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 PACRGLQ8N7B6 248 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 OR2D3Q8NGH3 330 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 RPS4Y2Q8TD47 263 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 FGF13Q92913 245 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 MBOAT7Q96N66 472 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 OR52B2Q96RD2 323 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 TXNL4BQ9NX01 149 aaKnown RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 ADAMTS7Q9UKP4 1686 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 DSCAMO60469 2012 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 SLIT2O94813 1529 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 TMED7-TICAM2A0A0A6YYA0 188 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 H0Y980 276 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 SLC17A3O00476 420 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 DEXIO95424 95 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 HLA-DQB2P05538 268 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 OCM2P0CE71 109 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 GZMBP10144 247 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 PSMD8P48556 350 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 RPS24P62847 133 aaKnown RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 HES1Q14469 280 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 EBPQ15125 230 aaKnown RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 SLC36A2Q495M3 483 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 CDKL4Q5MAI5 379 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 ZNF767PQ75MW2 155 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 IQCF2Q8IXL9 164 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 DAND5Q8N907 189 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 HAVCR2Q8TDQ0 301 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 RNASE6Q93091 150 aaKnown RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 ANKRD36BP1Q96IX9 119 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 MIEN1Q9BRT3 115 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 NKX6-2Q9C056 277 aaPredicted RBP0.86□□□□□ -2.27
VPS13A-206ENST00000376646 MAP1LC3AQ9H492 121 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 BABAM2Q9NXR7 383 aa0.86□□□□□ -2.27
VPS13A-206ENST00000376646 GRIFINA4D1Z8 144 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 C11orf86A6NJI1 115 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 OR5K4A6NMS3 321 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 KNCNA6PVL3 124 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 H3BPC8 53 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 M0QZ92 97 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 IGHV1-69P01742 117 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 HLA-DRAP01903 254 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 MAGEA2P43356 314 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 SNAP25P60880 206 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 BTN3A2P78410 334 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 SS18Q15532 418 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 N4BP2L1Q5TBK1 243 aaPredicted RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 GLT6D1Q7Z4J2 308 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 SLC51BQ86UW2 128 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 COMMD7Q86VX2 200 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 UBL4BQ8N7F7 174 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 CNEP1R1Q8N9A8 125 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 MS4A6EQ96DS6 147 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 CPNE2Q96FN4 548 aaPredicted RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 PECRQ9BY49 303 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 FGFR1OP2Q9NVK5 253 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 USE1Q9NZ43 259 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 PSORS1C2Q9UIG4 136 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 DKKL1Q9UK85 242 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 POLR1DQ9Y2S0 133 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 ARHGAP32A7KAX9 2087 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 NAV1Q8NEY1 1877 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 HECW2Q9P2P5 1572 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 ADGRB3O60242 1522 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 IGHV3-15A0A0B4J1V0 119 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 A0A1W2PQL4 384 aaPredicted RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 CXCR6O00574 342 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 MT-CO2P00403 227 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 APOEP02649 317 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 C8orf88P0DMB2 117 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 ALOX5APP20292 161 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 RPL12P30050 165 aaKnown RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 RSU1Q15404 277 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 TNFAIP8L2Q6P589 184 aaPredicted RBP0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms