RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CEACAM21Q3KPI0 293 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 RASL11AQ6T310 242 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 SBSNQ6UWP8 590 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 LRP11Q86VZ4 500 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 CNIH3Q8TBE1 160 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 SSBP3Q9BWW4 388 aaPredicted RBP6.93□□□□□ -1.3
LIMS1-203ENST00000393310 THYN1Q9P016 225 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 FRRS1LQ9P0K9 344 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 VAX2Q9UIW0 290 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ANXA10Q9UJ72 324 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 RPL36Q9Y3U8 105 aaKnown RBP6.93□□□□□ -1.3
LIMS1-203ENST00000393310 GTF3C1Q12789 2109 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 CSMD1Q96PZ7 3565 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 KIF26BQ2KJY2 2108 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 A0A087WUU8 490 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 FAM159BA6NKW6 160 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 HLA-AP01891 365 aaKnown RBP6.93□□□□□ -1.3
LIMS1-203ENST00000393310 PSG1P11464 419 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ATF1P18846 271 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 PLPPR5Q32ZL2 321 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 UNC50Q53HI1 259 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 Q5BKY6 102 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 MRPL54Q6P161 138 aaKnown RBP6.93□□□□□ -1.3
LIMS1-203ENST00000393310 OR2W3Q7Z3T1 314 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF525Q8N782 197 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM116Q8NCL8 245 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 OR5AP2Q8NGF4 316 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 OR4D11Q8NGI4 311 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM37Q8WXS4 190 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ADAT1Q9BUB4 502 aaKnown RBP6.93□□□□□ -1.3
LIMS1-203ENST00000393310 RETNQ9HD89 108 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ACOT13Q9NPJ3 140 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 FAM215AQ9Y5M1 114 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 TNFRSF18Q9Y5U5 241 aa6.93□□□□□ -1.3
LIMS1-203ENST00000393310 ZCWPW2A0A1B0GU75 182 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM269A0A1B0GVZ9 245 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 GXYLT2A0PJZ3 443 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 GEMIN2O14893 280 aaKnown RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 HLA-HP01893 362 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 MT-ND6P03923 174 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CX3CR1P49238 355 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 HIST1H1AQ02539 215 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF92Q03936 586 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 C3orf36Q3SXR2 165 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 FAHD1Q6P587 224 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 MARCH1Q8TCQ1 289 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 GHSRQ92847 366 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SLIRPQ9GZT3 109 aaKnown RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 EXOSC3Q9NQT5 275 aaKnown RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 NECAP2Q9NVZ3 263 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 A0A0J9YW62 118 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 TGFBR3LH3BV60 316 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 G6PCP35575 357 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 LHX2P50458 406 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SRPXP78539 464 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CXorf66Q5JRM2 361 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 STUMQ69YW2 141 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 LAX1Q8IWV1 398 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 OR10P1Q8NGE3 313 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 OR1P1Q8NH06 330 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CMTM2Q8TAZ6 248 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SCGB1C1Q8TD33 95 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 VN1R17PQ8TDU5 208 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 COPS9Q8WXC6 57 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CTHRC1Q96CG8 243 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 BPESC1Q9GZL8 116 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SLC45A2Q9UMX9 530 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM14AQ9Y6G1 99 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 MED13Q9UHV7 2174 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 TMEM262E9PQX1 116 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SIX3O95343 332 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 PPP1CBP62140 327 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 C1orf194Q5T5A4 169 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CGB2Q6NT52 195 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF433Q8N7K0 673 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 NRGNQ92686 78 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 S100A16Q96FQ6 103 aaKnown RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 P2RX4Q99571 388 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 ZNF665Q9H7R5 613 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CSMD2Q7Z408 3487 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CEP192Q8TEP8 1941 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CLPSL1A2RUU4 121 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 MMP9P14780 707 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 HIST1H1CP16403 213 aaKnown RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CLDN12P56749 244 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 CD300EQ496F6 205 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SPATA45Q537H7 98 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 NHLRC3Q5JS37 347 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 MAPK1IP1LQ8NDC0 245 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 TVP23CQ96ET8 276 aa6.92□□□□□ -1.3
LIMS1-203ENST00000393310 SPAG8Q99932 426 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 POLR3KQ9Y2Y1 108 aaPredicted RBP6.92□□□□□ -1.3
LIMS1-203ENST00000393310 HELZP42694 1942 aaKnown RBP6.91□□□□□ -1.3
LIMS1-203ENST00000393310 DCHS1Q96JQ0 3298 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 A0A1B0GV50 99 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 HMSDA8MTL9 139 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 MCRIP1C9JLW8 97 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 MFNGO00587 321 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 H2BFMP0C1H6 154 aa6.91□□□□□ -1.3
LIMS1-203ENST00000393310 KIR2DL2P43627 348 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms