RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 IL20Q9NYY1 176 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 TCF21O43680 179 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 SLC16A13Q7RTY0 426 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 OR8D4Q8NGM9 314 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 ZNF488Q96MN9 340 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 DUX3Q96PT4 197 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 UCN2Q96RP3 112 aa8.85□□□□□ -0.99
CLIP1-202ENST00000358808 CTXND1A0A1B0GTU2 59 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RBMY1BA6NDE4 496 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RBMY1EA6NEQ0 496 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PLPP2O43688 288 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RBMY1DP0C7P1 496 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 LINC00869P0C866 280 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RBMY1A1P0DJD3 496 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RBMY1CP0DJD4 496 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 RPS20P60866 119 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 CBLN3Q6UW01 205 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 SSC4DQ8WTU2 575 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 NUP214P35658 2090 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PPIAL4CA0A0B4J2A2 164 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PPIAL4GP0DN37 164 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 MRGPRGQ86SM5 289 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 MRPL24Q96A35 216 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 ISOC2Q96AB3 205 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PGLYRP3Q96LB9 341 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PXMP4Q9Y6I8 212 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 ISG15P05161 165 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 TRGC1P0CF51 173 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 NPPCP23582 126 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 C1orf162Q8NEQ5 155 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 MIOXQ9UGB7 285 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 EVPLQ92817 2033 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 PGPA6NDG6 321 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 GDF9O60383 454 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 CT62P0C5K7 136 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 NAT2P11245 290 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 ARF6P62330 175 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 GCSAMQ8N6F7 178 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 ITLN1Q8WWA0 313 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 ZCCHC14Q8WYQ9 949 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 C2orf88Q9BSF0 95 aa8.84□□□□□ -0.99
CLIP1-202ENST00000358808 EXOGQ9Y2C4 368 aaKnown RBP8.84□□□□□ -0.99
CLIP1-202ENST00000358808 FTH1P19P0C7X4 201 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 MARVELD3Q96A59 401 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 TRAV30A0A087WSZ9 112 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 VSIG10L2P0DP72 767 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 PAPPA-AS1Q5QFB9 102 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 SP7Q8TDD2 431 aaPredicted RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 PHLDA1Q8WV24 401 aaPredicted RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 TRBV7-9A0A0J9YWB2 115 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 CYB5R3P00387 301 aaPredicted RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 SURF2Q15527 256 aaPredicted RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 CLPPQ16740 277 aaPredicted RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 IBA57Q5T440 356 aaKnown RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 MBNL2Q5VZF2 373 aaKnown RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 MRPS18BQ9Y676 258 aaKnown RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 SLC25A20O43772 301 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 DRD3P35462 400 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 SCAND1P57086 179 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 ABLIM2Q6H8Q1 611 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 TMEM136Q6ZRR5 245 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 MMD2Q8IY49 270 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 OR4X2Q8NGF9 303 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 NPVFQ9HCQ7 196 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 RNF115Q9Y4L5 304 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 TRGV2A0A075B6R0 118 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 FAM74A7A6NL05 159 aa8.83□□□□□ -1
CLIP1-202ENST00000358808 RAE1P78406 368 aaKnown RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 MARS2Q96GW9 593 aaKnown RBP8.83□□□□□ -1
CLIP1-202ENST00000358808 IFNL4K9M1U5 179 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 LIFP15018 202 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 LYZL2Q7Z4W2 148 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 RGP1Q92546 391 aaPredicted RBP8.82□□□□□ -1
CLIP1-202ENST00000358808 CA11O75493 328 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 UCP2P55851 309 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 RPL8P62917 257 aaKnown RBP8.82□□□□□ -1
CLIP1-202ENST00000358808 MESTQ5EB52 335 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 DNASE2BQ8WZ79 361 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 TMEM70Q9BUB7 260 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 RAB33BQ9H082 229 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 KCNE1BA0A087WTH5 132 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 ASPDHA6ND91 283 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 MGST3O14880 152 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 IL4P05112 153 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 REG1AP05451 166 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 STAG3L3P0CL85 134 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 C1orf174Q8IYL3 243 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 ICE1Q9Y2F5 2266 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 DICER1Q9UPY3 1922 aaKnown RBP8.82□□□□□ -1
CLIP1-202ENST00000358808 A0A1W2PQD3 144 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 ANKRD20A5PA0PJZ0 165 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 PRR32B1ATL7 298 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 H3BQ15 152 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 TSPAN2O60636 221 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 ZNF688P0C7X2 276 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 HOXA6P31267 233 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 OTX1P32242 354 aaPredicted RBP8.82□□□□□ -1
CLIP1-202ENST00000358808 SPATA45Q537H7 98 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 TMEM170BQ5T4T1 132 aa8.82□□□□□ -1
CLIP1-202ENST00000358808 ALG14Q96F25 216 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms