RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TMEM269A0A1B0GVZ9 245 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1B0GW54 56 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1B0GX51 115 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1W2PRE2 83 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CIB4A0PJX0 185 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM72A0PK05 275 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLAC8L1A1L4L8 177 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAP1LC3B2A6NCE7 125 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00862A6NCI5 91 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC160A6NGH7 325 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF98A6NK75 572 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR5H1A6NKK0 313 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SIGLEC16A6NMB1 481 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KNCNA6PVL3 124 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF705GA8MUZ8 300 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A8MWL6 223 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 EPM2AB3EWF7 344 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM25AB3EWG3 89 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM25CB3EWG5 89 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM25GB3EWG6 89 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SRRM5B3KS81 715 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 B4DEV8 164 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 C5orf58C9J3I9 102 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KRBOX1C9JBD0 128 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 F8W036 122 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAPPC2LH3BP13 241 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 H3BSA7 217 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 H7C1C5 153 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 J3KT08 172 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7EP13 123 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 M0R1X1 148 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LGALS9O00182 355 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PIRO00625 290 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BPY2O14599 106 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DEGS1O15121 323 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RTL8CO15255 209 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RGS5O15539 181 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MFSD11O43934 449 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TPST1O60507 370 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SS18L1O75177 396 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF253O75346 499 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 POP7O75817 140 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCNKO75909 580 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DHRS3O75911 302 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2J2O76002 312 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNK2O95069 426 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GABARAPO95166 117 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 APOMO95445 188 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DUS4LO95620 317 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF682O95780 498 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRYZL1O95825 349 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PDYNP01213 254 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFNA7P01567 189 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV2-8P01709 118 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV3-27P01718 113 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV3-23P01764 117 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV3-13P01766 116 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 HLA-DRB1P01911 266 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAS1P04201 325 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GYPCP04921 128 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 REG1AP05451 166 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 C8GP07360 202 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BPGMP07738 259 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SOD3P08294 240 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LGALS1P09382 135 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBP1P09455 135 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBP1P09467 338 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF688P0C7X2 276 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF806P0C7X5 589 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CFC1BP0CG36 223 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CFC1P0CG37 223 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM236CP0DP71 79 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGF6P10767 208 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ESDP10768 282 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSG2P11465 335 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 COX4I1P13073 169 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTSEP14091 401 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTLA4P16410 223 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF30P17039 623 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ELK1P19419 428 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ORM2P19652 201 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPS4Y1P22090 263 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPIBP23284 216 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GATA2P23769 480 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDK2P24941 298 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CNTFRP26992 372 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATP6V0CP27449 155 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SDC4P31431 198 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GABRA3P34903 492 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CA5AP35218 305 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OPRM1P35372 400 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 G6PCP35575 357 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MDH2P40926 338 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 AKR1C3P42330 323 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAP2K4P45985 399 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 REG1BP48304 166 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSMD8P48556 350 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SERPINB10P48595 397 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 NMUP48645 174 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms