RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TTC32Q5I0X7 151 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 NHLRC3Q5JS37 347 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 SLC35E4Q6ICL7 350 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FAM53AQ6NSI3 398 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 MRPL54Q6P161 138 aaKnown RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 GUSBP11Q6P575 273 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 RTN4RL2Q86UN3 420 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CBLN2Q8IUK8 224 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF441Q8N8Z8 693 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 RFESDQ8TAC1 157 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CCL17Q92583 94 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FAM131CQ96AQ9 280 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 RARRES2Q99969 163 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 HSPB7Q9UBY9 170 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 AKAP11Q9UKA4 1901 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1W2PPV9 198 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 TSPAN2O60636 221 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 LINC00869P0C866 280 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 PSG2P11465 335 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 AGAP20933 346 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 MPV17P39210 176 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 IGLV3-21P80748 117 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 ZXDAP98168 799 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 OR51G1Q8NGK1 321 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 VN1R17PQ8TDU5 208 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF721Q8TF20 911 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 KCNK17Q96T54 332 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 GPR61Q9BZJ8 451 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 IDI2-AS1Q9NZ38 188 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FBLN5Q9UBX5 448 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 SCGB1A1P11684 91 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CKS2P33552 79 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FAM106AQ4KMX7 169 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FAM166AQ6J272 317 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CBLN3Q6UW01 205 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 TUSC5Q8IXB3 177 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CACNG8Q8WXS5 425 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 GTF3AQ92664 365 aaKnown RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 TRAV34A0A0B4J273 112 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 FAM90A9PA6NNJ1 464 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 C1orf162Q8NEQ5 155 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 RAX2Q96IS3 184 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 KIR2DL4Q99706 377 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 RGPD2P0DJD1 1756 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 KIF13AQ9H1H9 1805 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TRAV8-7A0A075B6U6 113 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 EML2O95834 649 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 NUDT3O95989 172 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 RPL31P62899 125 aaKnown RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 IGSF11Q5DX21 431 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 MOGAT3Q86VF5 341 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 LINC00518Q8N0U6 118 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 CYB561D1Q8N8Q1 229 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM171Q8WVE6 324 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 GUCD1Q96NT3 240 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 PRSS27Q9BQR3 290 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 HSPB9Q9BQS6 159 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 MS4A7Q9GZW8 240 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 KIAA1551Q9HCM1 1747 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 CDIPTO14735 213 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 MPZP25189 248 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 CTSSP25774 331 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 C10orf111Q8N326 155 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 OR8A1Q8NGG7 326 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 OR9G1Q8NH87 305 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 OSR1Q8TAX0 266 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 SP7Q8TDD2 431 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 IMMP2LQ96T52 175 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 MRPL18Q9H0U6 180 aaKnown RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 ELOVL5Q9NYP7 299 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 RABAC1Q9UI14 185 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 IGLV1-36A0A0B4J1U3 117 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TMPRSS2O15393 492 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 IL4P05112 153 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 COX7A1P24310 79 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TNFRSF9Q07011 255 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 DNLZQ5SXM8 178 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 CYP2G1PQ6ZSU1 146 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 FAM214BQ7L5A3 538 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 C1orf210Q8IVY1 113 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 SELENOHQ8IZQ5 122 aaKnown RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 BATF2Q8N1L9 274 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TM2D1Q9BX74 207 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 PARD6GQ9BYG4 376 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-203ENST00000409050 ANKRD12Q6UB98 2062 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 DOCK1Q14185 1865 aa5.28□□□□□ -1.56
SCN1A-203ENST00000409050 TRBV23-1A0A0A0MS06 115 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM14DPA8MWL7 114 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 DEFB108AA8MXU0 73 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 SMIM13P0DJ93 91 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF250P15622 560 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 CXCL2P19875 107 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 P2RY4P51582 365 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 HBBP68871 147 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TRIP6Q15654 476 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 LRRC75AQ8NAA5 344 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OR4C13Q8NGP0 309 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 Q96M66 194 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 SLC25A2Q9BXI2 301 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms