RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IL2RGP31785 369 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 RAB5CP51148 216 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 PAX9P55771 341 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 MRGPRGQ86SM5 289 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 FAM90A1Q86YD7 464 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 CD177Q8N6Q3 437 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 ZBTB34Q8NCN2 500 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 SNRNP40Q96DI7 357 aaKnown RBP16.49■□□□□ 0.23
CLIP3-206ENST00000593074 UQCC1Q9NVA1 299 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 ACACAQ13085 2346 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 HEATR1Q9H583 2144 aaKnown RBP16.49■□□□□ 0.23
CLIP3-206ENST00000593074 WRBO00258 174 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 IGKV1-5P01602 117 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 KLF3P57682 345 aaPredicted RBP16.49■□□□□ 0.23
CLIP3-206ENST00000593074 TMPRSS3P57727 454 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 ZNF273Q14593 569 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 Q6ZRM9 215 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 HSD17B11Q8NBQ5 300 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 TMEM171Q8WVE6 324 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 LURAP1Q96LR2 239 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 SEBOXQ9HB31 216 aaPredicted RBP16.49■□□□□ 0.23
CLIP3-206ENST00000593074 TREM1Q9NP99 234 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 ZNF835Q9Y2P0 537 aa16.49■□□□□ 0.23
CLIP3-206ENST00000593074 ANKRD11Q6UB99 2663 aaPredicted RBP16.49■□□□□ 0.23
CLIP3-206ENST00000593074 IGLV3-9A0A075B6K5 115 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 NXPH3O95157 252 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 EGR1P18146 543 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 GLIPR1P48060 266 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 ASCL1P50553 236 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 ARHGDIBP52566 201 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 EIF4EBP1Q13541 118 aaPredicted RBP16.48■□□□□ 0.23
CLIP3-206ENST00000593074 CLINT1Q14677 625 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 MSMO1Q15800 293 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 ZNF295-AS1Q8N0V1 137 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 SVBPQ8N300 66 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 RNASE11Q8TAA1 199 aaKnown RBP16.48■□□□□ 0.23
CLIP3-206ENST00000593074 MRGPRDQ8TDS7 321 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 TSNAXQ99598 290 aaKnown RBP16.48■□□□□ 0.23
CLIP3-206ENST00000593074 NKX6-2Q9C056 277 aaPredicted RBP16.48■□□□□ 0.23
CLIP3-206ENST00000593074 TMEM231Q9H6L2 316 aa16.48■□□□□ 0.23
CLIP3-206ENST00000593074 ZNF737O75373 536 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 FAM87AP0C7U9 286 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 PRDX2P32119 198 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 ID4P47928 161 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 TAGLNQ01995 201 aaKnown RBP16.47■□□□□ 0.23
CLIP3-206ENST00000593074 OR52L2PQ8NGH6 319 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 SEC11CQ9BY50 192 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 OR2D2Q9H210 308 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 ELOVL5Q9NYP7 299 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 CACNG5Q9UF02 275 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 CACFD1Q9UGQ2 172 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 STRAPQ9Y3F4 350 aaKnown RBP16.47■□□□□ 0.23
CLIP3-206ENST00000593074 CD5P06127 495 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 OMGP23515 440 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 IZUMO4Q1ZYL8 232 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 OR13A1Q8NGR1 328 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 OR5C1Q8NGR4 320 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 C5orf30Q96GV9 206 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 RAB40CQ96S21 281 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 FAM96BQ9Y3D0 163 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 KIAA2026Q5HYC2 2103 aa16.47■□□□□ 0.23
CLIP3-206ENST00000593074 IGKV1D-17A0A075B6S4 117 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 F8W036 122 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 ZNF16P17020 682 aaPredicted RBP16.46■□□□□ 0.23
CLIP3-206ENST00000593074 SSTR5P35346 364 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 UCNP55089 124 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 TRAT1Q6PIZ9 186 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 NINJ1Q92982 152 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 MEGF10Q96KG7 1140 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 OR2V2Q96R30 315 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 SH3BGRL2Q9UJC5 107 aa16.46■□□□□ 0.23
CLIP3-206ENST00000593074 DNASE2O00115 360 aaPredicted RBP16.46■□□□□ 0.22
CLIP3-206ENST00000593074 CST7O76096 145 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 DYNLT3P51808 116 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 RPS23P62266 143 aaKnown RBP16.46■□□□□ 0.22
CLIP3-206ENST00000593074 GUCA2BQ16661 112 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 VHLLQ6RSH7 139 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 PUSL1Q8N0Z8 303 aaKnown RBP16.46■□□□□ 0.22
CLIP3-206ENST00000593074 COMMD1Q8N668 190 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 GCSAMQ8N6F7 178 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 WSB1Q9Y6I7 421 aa16.46■□□□□ 0.22
CLIP3-206ENST00000593074 ATP6V1G2-DDX39BF2Z307 99 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 RNASEK-C17orf49H0YIS7 233 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 C16orf97H3BN30 126 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 TRIM77I1YAP6 450 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 CCKARP32238 428 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 CAMLGP49069 296 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 PRR30Q53SZ7 412 aaPredicted RBP16.45■□□□□ 0.22
CLIP3-206ENST00000593074 FAM53AQ6NSI3 398 aaPredicted RBP16.45■□□□□ 0.22
CLIP3-206ENST00000593074 C22orf34Q6ZV56 151 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 TPRX1Q8N7U7 411 aa16.45■□□□□ 0.22
CLIP3-206ENST00000593074 C15orf65H3BRN8 121 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 K7N7A8 449 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 ATP6V0CP27449 155 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 PPP1CCP36873 323 aaKnown RBP16.44■□□□□ 0.22
CLIP3-206ENST00000593074 MIDNQ504T8 468 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 SPRNQ5BIV9 151 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 C19orf12Q9NSK7 152 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 BSNQ9UPA5 3926 aa16.44■□□□□ 0.22
CLIP3-206ENST00000593074 LOC105371267A0A1B0GV96 52 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms