RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RBMXL1Q96E39 390 aaKnown RBP7.51□□□□□ -1.21
VPS35-211ENST00000569950 YPEL2Q96QA6 119 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 HEXA-AS1Q9H8Q6 139 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 OR2S2Q9NQN1 319 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 CDC42EP3Q9UKI2 254 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 MGAT4AQ9UM21 535 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 COL6A5A8TX70 2615 aa7.51□□□□□ -1.21
VPS35-211ENST00000569950 IGKV1D-13A0A0B4J2D9 117 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 FABP12A6NFH5 140 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 BUB1B-PAK6H3BSN5 160 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 ITGB1BP1O14713 200 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 IGLV2-14P01704 120 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 CD74P04233 296 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 ZNF735P0CB33 412 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 IGKV1-13P0DP09 117 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 KIR2DS4P43632 304 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 GNG10P50151 68 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 IL18Q14116 193 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 KIR2DS1Q14954 304 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 MIDNQ504T8 468 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 GPR157Q5UAW9 335 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 STEAP3Q658P3 488 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 LINC00299Q6ZSB3 139 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 OVCH2Q7RTZ1 564 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 OR5AP2Q8NGF4 316 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 OR13D1Q8NGV5 346 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 OR9G1Q8NH87 305 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 IL1F10Q8WWZ1 152 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 SLC6A7Q99884 636 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 C11orf54Q9H0W9 315 aaPredicted RBP7.5□□□□□ -1.21
VPS35-211ENST00000569950 MMP28Q9H239 520 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 ESM1Q9NQ30 184 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 RDH8Q9NYR8 311 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 KCNIP1Q9NZI2 227 aa7.5□□□□□ -1.21
VPS35-211ENST00000569950 PLXNB1O43157 2135 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 hCG_1809904A0A1W2PP81 198 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PPE2 198 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PPI3 338 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PR64 198 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 A0A1W2PRV1 198 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 BET1O15155 118 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 ST8SIA5O15466 376 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 ARG1P05089 322 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 FAM157CP0CG43 387 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 PTBP1P26599 531 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS35-211ENST00000569950 TALDO1P37837 337 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 CEACAM6P40199 344 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 CBX5P45973 191 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 OR3A3P47888 321 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 RFX2P48378 723 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 BPIFB3P59826 476 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 EIF4EBP1Q13541 118 aaPredicted RBP7.49□□□□□ -1.21
VPS35-211ENST00000569950 KLF9Q13886 244 aaPredicted RBP7.49□□□□□ -1.21
VPS35-211ENST00000569950 HABP2Q14520 560 aaPredicted RBP7.49□□□□□ -1.21
VPS35-211ENST00000569950 BAK1Q16611 211 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 CHRFAM7AQ494W8 412 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 FAM131AQ6UXB0 335 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 CFHR4Q92496 578 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 BEX2Q9BXY8 128 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 TINAGL1Q9GZM7 467 aaPredicted RBP7.49□□□□□ -1.21
VPS35-211ENST00000569950 MEGF9Q9H1U4 602 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 GNG12Q9UBI6 72 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 SLC23A1Q9UHI7 598 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 TBL2Q9Y4P3 447 aaKnown RBP7.49□□□□□ -1.21
VPS35-211ENST00000569950 STAB1Q9NY15 2570 aa7.49□□□□□ -1.21
VPS35-211ENST00000569950 TNCP24821 2201 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 ANKRD20A5PA0PJZ0 165 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 VGLL3A8MV65 326 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 PMP2P02689 132 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 CD3DP04234 171 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 SRD5A1P18405 259 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 NFYAP23511 347 aaPredicted RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 ZBTB25P24278 435 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 HLA-DMAP28067 261 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 RCVRNP35243 200 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 HRH1P35367 487 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 LINC00205P59089 165 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 MRPS10P82664 201 aaKnown RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 MRPS15P82914 257 aaKnown RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 SSBP1Q04837 148 aaKnown RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 DYRK1AQ13627 763 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 VAX1Q5SQQ9 334 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 TPTE2P1Q5T6R2 138 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 MINOS1Q5TGZ0 78 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 AADACL3Q5VUY0 350 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 DHRS11Q6UWP2 260 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 ZNF833PQ6ZTB9 187 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 LHFPL1Q86WI0 220 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 PRIMA1Q86XR5 153 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 SIGLECL1Q8N7X8 197 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 ZDHHC22Q8N966 263 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 ABHD14BQ96IU4 210 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 ABHD14AQ9BUJ0 271 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 FXYD6Q9H0Q3 95 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 DPM3Q9P2X0 92 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 RABL2AQ9UBK7 228 aaPredicted RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 ZNF107Q9UII5 783 aaPredicted RBP7.48□□□□□ -1.21
VPS35-211ENST00000569950 RABL2BQ9UNT1 228 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 MINOS1-NBL1R4GNA1 71 aa7.48□□□□□ -1.21
VPS35-211ENST00000569950 SAA2-SAA4A0A096LPE2 208 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms