RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ST8SIA3O43173 380 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 PSPNO60542 156 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 TUSC2O75896 110 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 EGR1P18146 543 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 GRNP28799 593 aaKnown RBP11.99□□□□□ -0.49
VPS33A-209ENST00000544349 CD80P33681 288 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 ZNF497Q6ZNH5 498 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 MOGAT3Q86VF5 341 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 GCSAMQ8N6F7 178 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 CA5BP1Q8WTZ4 195 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 PLPPR2Q96GM1 343 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 CCL28Q9NRJ3 127 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 ERRFI1Q9UJM3 462 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-209ENST00000544349 TMED3Q9Y3Q3 217 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 POMT1Q9Y6A1 747 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 SHISA9B4DS77 424 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 RNASEK-C17orf49H0YIS7 233 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 IFNL4K9M1U5 179 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 TNFSF12O43508 249 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 TK1P04183 234 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 CTXN2P0C2S0 81 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 NFYBP25208 207 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 P2RY1P47900 373 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 TNFAIP6P98066 277 aaPredicted RBP11.99□□□□□ -0.49
VPS33A-209ENST00000544349 HFEQ30201 348 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 SELENOHQ8IZQ5 122 aaKnown RBP11.99□□□□□ -0.49
VPS33A-209ENST00000544349 RFNGQ9Y644 331 aa11.99□□□□□ -0.49
VPS33A-209ENST00000544349 IGSF23A1L1A6 192 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-209ENST00000544349 NXPH3O95157 252 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 LHBP01229 141 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 CD5P06127 495 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 TNFSF4P23510 183 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 F2RL1P55085 397 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 POLR2GP62487 172 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS33A-209ENST00000544349 HLA-DRB3P79483 266 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 EWSR1Q01844 656 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS33A-209ENST00000544349 FAM122CQ6P4D5 195 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 DMRTC2Q8IXT2 367 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-209ENST00000544349 HSD17B11Q8NBQ5 300 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 TMEM56Q96MV1 263 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 GINS3Q9BRX5 216 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 KCNJ16Q9NPI9 418 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 UBE2J1Q9Y385 318 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-209ENST00000544349 TMEM56-RWDD3S4R434 201 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 CACNA1BQ00975 2339 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 PLCE1Q9P212 2302 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 ICE1Q9Y2F5 2266 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 FAM24AA6NFZ4 105 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 VSTM5A8MXK1 200 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 ADAM20O43506 726 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 RND3P61587 244 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 COL10A1Q03692 680 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 MIDNQ504T8 468 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 FAM90A1Q86YD7 464 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 FAM185AQ8N0U4 392 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 ZNF565Q8N9K5 539 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 LYPD6BQ8NI32 183 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 MAGT1Q9H0U3 335 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 GCM1Q9NP62 436 aa11.98□□□□□ -0.49
VPS33A-209ENST00000544349 TPRP12270 2363 aaKnown RBP11.97□□□□□ -0.49
VPS33A-209ENST00000544349 COL6A6A6NMZ7 2263 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 TRAV39A0A0B4J263 110 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.97□□□□□ -0.49
VPS33A-209ENST00000544349 E7EQL1 145 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 TFF1P04155 84 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 ADH4P08319 380 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 SPP1P10451 314 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 PSG2P11465 335 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 CXorf66Q5JRM2 361 aaPredicted RBP11.97□□□□□ -0.49
VPS33A-209ENST00000544349 DHRS7BQ6IAN0 325 aaPredicted RBP11.97□□□□□ -0.49
VPS33A-209ENST00000544349 MOB1BQ7L9L4 216 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 ODF3L1Q8IXM7 274 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 CD177Q8N6Q3 437 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 DIRC2Q96SL1 478 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 MBNL3Q9NUK0 354 aaKnown RBP11.97□□□□□ -0.49
VPS33A-209ENST00000544349 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 TRAPPC2LQ9UL33 140 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 WIPI2Q9Y4P8 454 aa11.97□□□□□ -0.49
VPS33A-209ENST00000544349 C17orf100A8MU93 164 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 SSSCA1O60232 199 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 CDS2O95674 445 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 CD3EP07766 207 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 DANCRP0C864 163 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 PRDX2P32119 198 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 ZNF616Q08AN1 781 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 SWI5Q1ZZU3 235 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 NMSQ5H8A3 153 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 GPR157Q5UAW9 335 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 ETV3LQ6ZN32 361 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 ZNF695Q8IW36 515 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 SPAG16Q8N0X2 631 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 CABLES2Q9BTV7 478 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 SEBOXQ9HB31 216 aaPredicted RBP11.96□□□□□ -0.49
VPS33A-209ENST00000544349 KIAA2026Q5HYC2 2103 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 ACACBO00763 2458 aa11.96□□□□□ -0.49
VPS33A-209ENST00000544349 SNAPINO95295 136 aa11.96□□□□□ -0.5
VPS33A-209ENST00000544349 H2AFB1P0C5Y9 115 aa11.96□□□□□ -0.5
VPS33A-209ENST00000544349 SEC11BP0C7V7 166 aa11.96□□□□□ -0.5
VPS33A-209ENST00000544349 OR3A1P47881 315 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms