RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 FZR1Q9UM11 496 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 C14orf166Q9Y224 244 aaKnown RBP6.84□□□□□ -1.31
NEDD8-207ENST00000533242 C17orf100A8MU93 164 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 TPT1P13693 172 aaKnown RBP6.84□□□□□ -1.31
NEDD8-207ENST00000533242 FCGR2CP31995 323 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 RBM11P57052 281 aaKnown RBP6.84□□□□□ -1.31
NEDD8-207ENST00000533242 DHRS11Q6UWP2 260 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 LYZL2Q7Z4W2 148 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 SIGLECL1Q8N7X8 197 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 ERGIC1Q969X5 290 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 MARC2Q969Z3 335 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 SPSB4Q96A44 273 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 SCGB3A2Q96PL1 93 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 C7orf69Q9H7B7 122 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 DUSP13Q9UII6 198 aa6.84□□□□□ -1.31
NEDD8-207ENST00000533242 IGHV1-69-2A0A0G2JMI3 117 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 ZNF816-ZNF321PA0A0X1KG74 233 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 C5orf49A4QMS7 147 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 OR7C1O76099 320 aaPredicted RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 DIRAS3O95661 229 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 BCL3P20749 454 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 PRTN3P24158 256 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 DUSP1P28562 367 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 RBMXP38159 391 aaKnown RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 FUT6P51993 359 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SELENOVP59797 346 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 TMEM187Q14656 261 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 CCDC54Q8NEL0 328 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 OR5L1Q8NGL2 311 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 RAB1CQ92928 201 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SLAMF9Q96A28 289 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 PAPOLGQ9BWT3 736 aaKnown RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SMIM3Q9BZL3 60 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SLC2A9Q9NRM0 540 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 C1orf123Q9NWV4 160 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 TAAR3PQ9P1P4 343 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 ZDHHC8Q9ULC8 765 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 FAM96BQ9Y3D0 163 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 DNAJC9-AS1A6NH13 148 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 HSPB6O14558 160 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 XRCC2O43543 280 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 PDCD6O75340 191 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 DEDDO75618 318 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SCGB1D2O95969 90 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 MBPP02686 304 aaPredicted RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 ZNF728P0DKX0 622 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 DTYMKP23919 212 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 LPAR6P43657 344 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 GPM6AP51674 278 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 RAB1AP62820 205 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 ALKBH6Q3KRA9 238 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 SGPP2Q8IWX5 399 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 PUSL1Q8N0Z8 303 aaKnown RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 OR52M1Q8NGK5 317 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 GLYATL2Q8WU03 294 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 RTN4IP1Q8WWV3 396 aaPredicted RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 TIMD4Q96H15 378 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 NECAP2Q9NVZ3 263 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 IL36GQ9NZH8 169 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 STARD10Q9Y365 291 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 WIPI2Q9Y4P8 454 aa6.83□□□□□ -1.32
NEDD8-207ENST00000533242 LSM5Q9Y4Y9 91 aaKnown RBP6.83□□□□□ -1.32
NEDD8-207ENST00000533242 IGLV3-9A0A075B6K5 115 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PPIAL4EA0A075B759 164 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PPIAL4CA0A0B4J2A2 164 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PQLC2LA1A4F0 135 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 TMEM218A2RU14 115 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PPIAL4DF5H284 164 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 FBXO24O75426 580 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PPIAL4FP0DN26 164 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 AADACP22760 399 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 HAAOP46952 286 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 KLF3P57682 345 aaPredicted RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PCBD1P61457 104 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PRDX4Q13162 271 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 ARL6IP1Q15041 203 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 TMEM88Q6PEY1 159 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 ZNF488Q96MN9 340 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 TP53RKQ96S44 253 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 PARP12Q9H0J9 701 aaKnown RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 TLNRD1Q9H1K6 362 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 OR51B6Q9H340 312 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 RGCCQ9H4X1 137 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 NAA60Q9H7X0 242 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 MTCH1Q9NZJ7 389 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 FBXL17Q9UF56 701 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 ZNF705EA8MWA4 302 aaPredicted RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 C9JQL5 133 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 BET1O15155 118 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 SYNGR1O43759 233 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 ATG12O94817 140 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 FARS2O95363 451 aaKnown RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 RNASE1P07998 156 aaKnown RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 RPL12P30050 165 aaKnown RBP6.82□□□□□ -1.32
NEDD8-207ENST00000533242 CCL8P80075 99 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 HERPUD1Q15011 391 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 TMEM268Q5VZI3 342 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 LDLRAD3Q86YD5 345 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 RNF141Q8WVD5 230 aa6.82□□□□□ -1.32
NEDD8-207ENST00000533242 C22orf15Q8WYQ4 148 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms