RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-206	ENST00000489853	EIF3I	Q13347	325 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	HLA-DQA1	Q5Y7H0	255 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	STUM	Q69YW2	141 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	C12orf54	Q6X4T0	127 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ASCL4	Q6XD76	172 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PARS2	Q7L3T8	475 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ATG4D	Q86TL0	474 aa	Predicted RBP	4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR5AS1	Q8N127	324 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SLC39A11	Q8N1S5	342 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR4N2	Q8NGD1	307 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR2Y1	Q8NGV0	311 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR11L1	Q8NGX0	322 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	NEIL1	Q96FI4	390 aa	Predicted RBP	4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SIGMAR1	Q99720	223 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TM2D1	Q9BX74	207 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ZNF286A	Q9HBT8	521 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TMEM38B	Q9NVV0	291 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	NECAP2	Q9NVZ3	263 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ANXA10	Q9UJ72	324 aa		4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TBL2	Q9Y4P3	447 aa	Known RBP	4.08	□□□□□ -1.76
SNRNP40-206	ENST00000489853	IGKV1D-8	A0A087WSZ0	117 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TRBV9	A0A0B4J1U6	114 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ODAM	A1E959	279 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR2T8	A6NH00	312 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PHF1	O43189	567 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	HCRTR1	O43613	425 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	CHST1	O43916	411 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GNG7	O60262	68 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	S1PR2	O95136	353 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GPR75	O95800	540 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TMEM50A	O95807	157 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TTR	P02766	147 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	C3orf79	P0CE67	100 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SMIM17	P0DL12	118 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PPIAL4G	P0DN37	164 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ZNF823	P16415	610 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	CEBPB	P17676	345 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GPR1	P46091	355 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	THBS3	P49746	956 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SELENOV	P59797	346 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	RPL27	P61353	136 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	RHOB	P62745	196 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ZNF154	Q13106	437 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ELAVL3	Q14576	367 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PRICKLE4	Q2TBC4	344 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	LRRC75B	Q2VPJ9	315 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	HLA-DRB5	Q30154	266 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	CXorf66	Q5JRM2	361 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR10J3	Q5JRS4	329 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PLPP4	Q5VZY2	271 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	VN1R2	Q8NFZ6	395 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR10P1	Q8NGE3	313 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR1K1	Q8NGR3	316 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR1B1	Q8NGR6	318 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR4F5	Q8NH21	305 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SGMS2	Q8NHU3	365 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR5P3	Q8WZ94	311 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	LIN37	Q96GY3	246 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	FAM103A1	Q9BTL3	118 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	APOO	Q9BUR5	198 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	RBM24	Q9BX46	236 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	RAB11FIP5	Q9BXF6	653 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	KRTAP17-1	Q9BYP8	105 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	VSIR	Q9H7M9	311 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	UBE2Z	Q9H832	354 aa	Predicted RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	FAM206A	Q9NX38	181 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PEF1	Q9UBV8	284 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	LSM7	Q9UK45	103 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	MMP17	Q9ULZ9	603 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853		Q9Y3F1	56 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	HCFC2	Q9Y5Z7	792 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GOLGA4	Q13439	2230 aa	Known RBP	4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ALPK2	Q86TB3	2170 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	C3orf85	A0A1B0GTC6	90 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853		A0A1W2PS18	150 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GAGE10	A6NGK3	116 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SHISA7	A6NL88	538 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ZNF850	A8MQ14	1090 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853		G3V3Y1	287 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853		M0R1X1	148 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	DEGS1	O15121	323 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	MPPED1	O15442	326 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	IGKV1D-16	P01601	117 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR10J4	P0C629	311 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SMIM10L1	P0DMW3	83 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	CEACAM3	P40198	252 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	OR3A4P	P47883	348 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	AMT	P48728	403 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	PAX9	P55771	341 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	DPT	Q07507	201 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	COX19	Q49B96	90 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	BVES-AS1	Q5T3Y7	98 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TSPO2	Q5TGU0	170 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TXNDC8	Q6A555	127 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	GTF2H5	Q6ZYL4	71 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	FAM57B	Q71RH2	274 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	TCF23	Q7RTU1	214 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	NEGR1	Q7Z3B1	354 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	ZNF695	Q8IW36	515 aa		4.07	□□□□□ -1.76
SNRNP40-206	ENST00000489853	SELENOH	Q8IZQ5	122 aa	Known RBP	4.07	□□□□□ -1.76

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