RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GPR141Q7Z602 305 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 Q8N1X5 172 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MRGPRDQ8TDS7 321 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CHST6Q9GZX3 395 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ARL6Q9H0F7 186 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LIN7BQ9HAP6 207 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 C8orf4Q9NR00 106 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 NRXN2Q9P2S2 1712 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 hDV102S1A0JD36 115 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 CEBPZOSA8MTT3 80 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 PTGES3LE9PB15 166 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 MT-ATP6P00846 226 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-30P01768 117 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-33P01772 117 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 GLAP06280 429 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 PRSS2P07478 247 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 ASAH2BP0C7U1 165 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-30-3P0DP02 117 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-30-5P0DP03 117 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 SERPINA2P20848 420 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 GPR183P32249 361 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 GTF2A1P52655 376 aaPredicted RBP2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 RBM11P57052 281 aaKnown RBP2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 BLCAPP62952 87 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 MYPOPQ86VE0 399 aaPredicted RBP2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 PELI3Q8N2H9 469 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 OR6M1Q8NGM8 313 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC25A38Q96DW6 304 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 CHRNA10Q9GZZ6 450 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 AAMDCQ9H7C9 122 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 Q9H8V8 135 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 TICRRQ7Z2Z1 1910 aa2.15□□□□□ -2.06
CCDC88A-205ENST00000426576 WDR87Q6ZQQ6 2873 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE12BA1L429 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 H3BSA7 217 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 HSD17B6O14756 317 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 MGST3O14880 152 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 NPIPB7O75200 414 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RBBP9O75884 186 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE7O76087 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 OR7A10O76100 309 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 PPP1R17O96001 155 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 MBP02144 154 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SERPINE2P07093 398 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RPSAP08865 295 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE12FP0CL80 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE12GP0CL81 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE12IP0CL82 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC1A6P48664 564 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 BCAP31P51572 246 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM3BP58499 235 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 MCCD1P59942 119 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TXNL4AP83876 142 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RHOGP84095 191 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SRSF3P84103 164 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 REEP5Q00765 189 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 HIST1H1AQ02539 215 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SIGIRRQ6IA17 410 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TRAT1Q6PIZ9 186 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF367Q7RTV3 350 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 OR10V1Q8NGI7 309 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RNF128Q8TEB7 428 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 YIPF6Q96EC8 236 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 MRAP2Q96G30 205 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ERMAPQ96PL5 475 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TSC22D3Q99576 134 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 KLHL31Q9H511 634 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 AMBNQ9NP70 447 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 HEYLQ9NQ87 328 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ASIC5Q9NY37 505 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RCC2Q9P258 522 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 WASHC3Q9Y3C0 194 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 DOCK1Q14185 1865 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A087WV62 115 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 IGKV1-12A0A0C4DH73 117 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM129A0AVI4 362 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM210A6NLX4 147 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SHISA9B4DS77 424 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 APOC4-APOC2K7ER74 178 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC17A2O00624 439 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ZSCAN12O43309 604 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 CRTAPO75718 401 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 APOC2P02655 101 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RCVRNP35243 200 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL27AP46776 148 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF816Q0VGE8 651 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 BTN1A1Q13410 526 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF846Q147U1 533 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 CDK5R1Q15078 307 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 MAPRE2Q15555 327 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 LGALSLQ3ZCW2 172 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL13AP3Q6NVV1 102 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 DEGS2Q6QHC5 323 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 PHF13Q86YI8 300 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 CYB561D1Q8N8Q1 229 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 C4orf3Q8WVX3 66 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 IMP4Q96G21 291 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM147Q9BVK8 224 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A22Q9H936 323 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 LIN7CQ9NUP9 197 aaKnown RBP2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms