RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR8U9P0C7N5 309 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 CCR6P51684 374 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 LUMP51884 338 aaPredicted RBP14.77□□□□□ -0.04
SDC1-203ENST00000403076 UTF1Q5T230 341 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 OR8U1Q8NH10 309 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 TERB2Q8NHR7 220 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 TOMM40LQ969M1 308 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 CLEC7AQ9BXN2 247 aa14.77□□□□□ -0.04
SDC1-203ENST00000403076 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.77□□□□□ -0.056e-8■■■■□ 19.3
SDC1-203ENST00000403076 FAM240BA0A1B0GVZ2 78 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 J3QLI3 93 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 TUSC2O75896 110 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 MMP9P14780 707 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 PGAM2P15259 253 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 PRRX1P54821 245 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 Q3ZCU0 254 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 NCR3LG1Q68D85 454 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 ZNF660Q6AZW8 331 aaPredicted RBP14.76□□□□□ -0.05
SDC1-203ENST00000403076 PDZD9Q8IXQ8 264 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 OR9G1Q8NH87 305 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 ENKURQ8TC29 256 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 TBX15Q96SF7 602 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 TOLLIPQ9H0E2 274 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 RNF150Q9ULK6 438 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 A0A087X0M5 115 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 IGHV2-26A0A0B4J1V2 119 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 A0A1B0GX30 115 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 OR5H14A6NHG9 310 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 ST8SIA5O15466 376 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 RAB7AP51149 207 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 KLRD1Q13241 179 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 SECTM1Q8WVN6 248 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 LHX4Q969G2 390 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 MOB3AQ96BX8 217 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 C18orf12Q96KH6 178 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 ABHD14AQ9BUJ0 271 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 SLC5A7Q9GZV3 580 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 DPAGT1Q9H3H5 408 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 UNKLQ9H9P5 680 aaKnown RBP14.76□□□□□ -0.05
SDC1-203ENST00000403076 SLC2A8Q9NY64 477 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 KCNS2Q9ULS6 477 aa14.76□□□□□ -0.05
SDC1-203ENST00000403076 J3QR06 171 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 SLC31A2O15432 143 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 HOXB4P17483 251 aaPredicted RBP14.75□□□□□ -0.05
SDC1-203ENST00000403076 CD34P28906 385 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 ZNF134P52741 427 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 CT45A1Q5HYN5 189 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 LY6G6FQ5SQ64 297 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 ZNF439Q8NDP4 499 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 OR10X1Q8NGY0 326 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 CT45A3Q8NHU0 189 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 TNFRSF14Q92956 283 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 ZNF221Q9UK13 617 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 ABCA1O95477 2261 aa14.75□□□□□ -0.05
SDC1-203ENST00000403076 CSMD1Q96PZ7 3565 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 IGKV1D-13A0A0B4J2D9 117 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 A0A1W2PRD5 423 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 A0A1W2PRF3 423 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 A0A1W2PRM7 423 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 ITGB1BP1O14713 200 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 IGKV1-13P0DP09 117 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 BTCP35070 178 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 RBMS2Q15434 407 aaKnown RBP14.74□□□□□ -0.05
SDC1-203ENST00000403076 RGS21Q2M5E4 152 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 AADACL3Q5VUY0 350 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 SPNS3Q6ZMD2 512 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 SLC25A48Q6ZT89 311 aaKnown RBP14.74□□□□□ -0.05
SDC1-203ENST00000403076 LHFPL1Q86WI0 220 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 ZNF596Q8TC21 504 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 MARCH1Q8TCQ1 289 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 ABHD14BQ96IU4 210 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 FXYD6Q9H0Q3 95 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 OR2D2Q9H210 308 aa14.74□□□□□ -0.05
SDC1-203ENST00000403076 MAST4O15021 2626 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 RNASEK-C17orf49H0YIS7 233 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 ARG1P05089 322 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 ECI1P42126 302 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 LPCAT3Q6P1A2 487 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 NRARPQ7Z6K4 114 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 LYG1Q8N1E2 194 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 C8orf31Q8N9H6 132 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 OR13C8Q8NGS7 320 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 ZFAND1Q8TCF1 268 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 SCGB3A2Q96PL1 93 aa14.73□□□□□ -0.05
SDC1-203ENST00000403076 SLC25A21Q9BQT8 299 aaPredicted RBP14.73□□□□□ -0.05
SDC1-203ENST00000403076 FLNAP21333 2647 aaKnown RBP14.73□□□□□ -0.05
SDC1-203ENST00000403076 HSD17B6O14756 317 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 CD5LO43866 347 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 SLC6A1P30531 599 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 GPR12P47775 334 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 LGALS4P56470 323 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 BAMBIQ13145 260 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 HCP5Q6MZN7 132 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 LINC00311Q8N616 119 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 OR11H6Q8NGC7 330 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 FAM216AQ8WUB2 273 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 UPRTQ96BW1 309 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 MMP28Q9H239 520 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 CCL28Q9NRJ3 127 aa14.72□□□□□ -0.05
SDC1-203ENST00000403076 ZNRD1Q9P1U0 126 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms