RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TMEM50BP56557 158 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 MEF2BQ02080 365 aaPredicted RBP13.58□□□□□ -0.23
HCFC1-201ENST00000310441 FZD5Q13467 585 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 TMEM30BQ3MIR4 351 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 LDLRAD3Q86YD5 345 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 LOC389332A0A1B0GUA5 103 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 METTL12A8MUP2 240 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 TRGC1P0CF51 173 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 TMEM45BQ96B21 275 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 AUP1Q9Y679 476 aa13.58□□□□□ -0.23
HCFC1-201ENST00000310441 IBA57Q5T440 356 aaKnown RBP13.58□□□□□ -0.24
HCFC1-201ENST00000310441 BEND2Q8NDZ0 799 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 WSB2Q9NYS7 404 aaPredicted RBP13.58□□□□□ -0.24
HCFC1-201ENST00000310441 NCOR1O75376 2440 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 FAM90A27PA6NNH2 459 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 FAM157AC9JC47 383 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 H0Y980 276 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 CTSVO60911 334 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 HLA-DRB1P01911 266 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 HOXD4P09016 255 aaPredicted RBP13.58□□□□□ -0.24
HCFC1-201ENST00000310441 NRIP2Q9BQI9 281 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 H7C2G1 150 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 CTLA4P16410 223 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 MPLP40238 635 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 KCNE5Q9UJ90 142 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 DYSFO75923 2080 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 FXYD1O00168 92 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 LEPROTL1O95214 131 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 EWSR1Q01844 656 aaKnown RBP eCLIP13.58□□□□□ -0.24
HCFC1-201ENST00000310441 KLF9Q13886 244 aaPredicted RBP13.58□□□□□ -0.24
HCFC1-201ENST00000310441 NCMAPQ5T1S8 102 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 PQLC2Q6ZP29 291 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 NUP37Q8NFH4 326 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 HSPB7Q9UBY9 170 aa13.58□□□□□ -0.24
HCFC1-201ENST00000310441 MMP16P51512 607 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 SLC25A34Q6PIV7 304 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 JKAMPQ9P055 326 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 SLC25A10Q9UBX3 287 aaPredicted RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 C9orf62Q8N4C0 152 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 HMGCLL1Q8TB92 370 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 TRAV30A0A087WSZ9 112 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 IL4P05112 153 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 RNASE1P07998 156 aaKnown RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 WNT16Q9UBV4 365 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 SAMD13Q5VXD3 122 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 RTN4RL1Q86UN2 441 aaPredicted RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 HCSTQ9UBK5 93 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 IGHV3-43A0A0B4J1X8 118 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 IGHV3-43DP0DP04 118 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 SHISA5Q8N114 240 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 APOBEC4Q8WW27 367 aaKnown RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 LOC285556D6RIA3 1793 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 FAM181BA6NEQ2 426 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 OGG1O15527 345 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 PAGE4O60829 102 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 FAM109BQ6ICB4 259 aaPredicted RBP13.57□□□□□ -0.24
HCFC1-201ENST00000310441 NUDT10Q8NFP7 164 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 CCL4L1Q8NHW4 92 aa13.57□□□□□ -0.24
HCFC1-201ENST00000310441 A0A1W2PQM1 296 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 FGF5P12034 268 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 TCF23Q7RTU1 214 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ZNF441Q8N8Z8 693 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 DDB2Q92466 427 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 CACNA1GO43497 2377 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 CEACAM18A8MTB9 384 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 CD74P04233 296 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ZNF793Q6ZN11 406 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 A0A0U1RQV5 110 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 LIPFP07098 398 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ATP5IP56385 69 aaPredicted RBP13.56□□□□□ -0.24
HCFC1-201ENST00000310441 PLPPR2Q96GM1 343 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 DLX6P56179 175 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 PARD6GQ9BYG4 376 aaPredicted RBP13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ASB1Q9Y576 335 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ZNF880Q6PDB4 577 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 PGLYRP3Q96LB9 341 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 OR10AC1Q8NH08 325 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 TIMP4Q99727 224 aa13.56□□□□□ -0.24
HCFC1-201ENST00000310441 PRDX2P32119 198 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 C17orf47Q8NEP4 570 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 H7C1H1 209 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 J3QT63 122 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 RPS4XP62701 263 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 RCC2Q9P258 522 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 HSPB1P04792 205 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 MMDQ15546 238 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 LEMD1Q68G75 181 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 DMKNQ6E0U4 476 aaPredicted RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 ALX4Q9H161 411 aaPredicted RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 RPL31P62899 125 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 DEFB123Q8N688 67 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 PEF1Q9UBV8 284 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 TYMSP04818 313 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 RAE1P78406 368 aaKnown RBP13.55□□□□□ -0.24
HCFC1-201ENST00000310441 LIPT2A6NK58 231 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 SOCS7O14512 581 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 FAM169BQ8N8A8 192 aa13.55□□□□□ -0.24
HCFC1-201ENST00000310441 NEUROG1Q92886 237 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms