RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 IGKV1D-17A0A075B6S4 117 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 ODAMA1E959 279 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 ZNF729A6NN14 1252 aaPredicted RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 DEFB108AA8MXU0 73 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 J3QKU1 62 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 GOSR2O14653 212 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 WNT9BO14905 357 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 MPPED1O15442 326 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 NDUFB3O43676 98 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CD8AP01732 235 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 RLN2P04090 185 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 RPA2P15927 270 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CXCL3P19876 107 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 NFYAP23511 347 aaPredicted RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 CEACAM6P40199 344 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 RAB7AP51149 207 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 FXYD4P59646 89 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CCL8P80075 99 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 AESQ08117 197 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 ATXN7L3Q14CW9 347 aaPredicted RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 Q3ZCU0 254 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 LRRC10Q5BKY1 277 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 IGSF11Q5DX21 431 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 TMEM65Q6PI78 240 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 NLRC3Q7RTR2 1065 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 RTN4RL2Q86UN3 420 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CD177Q8N6Q3 437 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 BOLLQ8N9W6 283 aaKnown RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 ADAD2Q8NCV1 583 aaKnown RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 BVESQ8NE79 360 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 OR52M1Q8NGK5 317 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 PLPPR1Q8TBJ4 325 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CASTOR1Q8WTX7 329 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 CAPSLQ8WWF8 208 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 ARL11Q969Q4 196 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 TIMD4Q96H15 378 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 C2orf50Q96LR7 162 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 FYTTD1Q96QD9 318 aaKnown RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 SHARPINQ9H0F6 387 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 GAL3ST2Q9H3Q3 398 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 SLA2Q9H6Q3 261 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 METTL8Q9H825 291 aaKnown RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 PLEKHF2Q9H8W4 249 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 SLC2A9Q9NRM0 540 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 GAB2Q9UQC2 676 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 UBE2J1Q9Y385 318 aaPredicted RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 INTS1Q8N201 2190 aaKnown RBP6.66□□□□□ -1.34
VPS39-213ENST00000570062 ITPR3Q14573 2671 aa6.66□□□□□ -1.34
VPS39-213ENST00000570062 C3orf85A0A1B0GTC6 90 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 C5orf51A6NDU8 294 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 C12orf77C9JDV5 145 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 YPEL1O60688 119 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 ZG16O60844 167 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 SLC25A4P12235 298 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 RCC1P18754 421 aaPredicted RBP6.65□□□□□ -1.34
VPS39-213ENST00000570062 GNRHRP30968 328 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 NUP62P37198 522 aaPredicted RBP6.65□□□□□ -1.34
VPS39-213ENST00000570062 TMEM33P57088 247 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 CATR1Q13166 79 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 MST1LQ2TV78 715 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 DTX2Q86UW9 622 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 LDLRAD3Q86YD5 345 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 ZBTB8BQ8NAP8 495 aaPredicted RBP6.65□□□□□ -1.34
VPS39-213ENST00000570062 OR52B4Q8NGK2 314 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 GRPEL2Q8TAA5 225 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 THAP6Q8TBB0 222 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 CD300LFQ8TDQ1 290 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 IL1F10Q8WWZ1 152 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 CCL17Q92583 94 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 RAB1CQ92928 201 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 TMEM230Q96A57 120 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 ABHD14BQ96IU4 210 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 DMRTB1Q96MA1 342 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 YPEL2Q96QA6 119 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 FXYD6Q9H0Q3 95 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 LINC00574Q9H8X3 128 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 OR2S2Q9NQN1 319 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 LIN7CQ9NUP9 197 aaKnown RBP6.65□□□□□ -1.34
VPS39-213ENST00000570062 RDH8Q9NYR8 311 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 ZNF581Q9P0T4 197 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 KIF25Q9UIL4 384 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 PAIP2BQ9ULR5 123 aaKnown RBP6.65□□□□□ -1.34
VPS39-213ENST00000570062 LAMP3Q9UQV4 416 aa6.65□□□□□ -1.34
VPS39-213ENST00000570062 UBR5O95071 2799 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 POLEQ07864 2286 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 NBPF19A0A087WUL8 3843 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TRBV23-1A0A0A0MS06 115 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 A0A0D9SG52 128 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 IGHV3-64DA0A0J9YX35 117 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 KBTBD11-OT1A0A1B0GTJ5 212 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 hCG_1809904A0A1W2PP81 198 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 A0A1W2PPE2 198 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 A0A1W2PR64 198 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 A0A1W2PRV1 198 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 A8MV72 311 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 H0Y980 276 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 F2RL2O00254 374 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TMPRSS2O15393 492 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 PGLYRP1O75594 196 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 CDS2O95674 445 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms