RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 LIN7CQ9NUP9 197 aaKnown RBP11.15□□□□□ -0.62
MSH6-210ENST00000540021 CCL4P13236 92 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 LIFP15018 202 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 CYB561P49447 251 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 RAC3P60763 192 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 MRGPRGQ86SM5 289 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 FAM58AQ8N1B3 248 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 CLN8Q9UBY8 286 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 PISDQ9UG56 409 aa11.15□□□□□ -0.63
MSH6-210ENST00000540021 UBE2NP61088 152 aaKnown RBP11.14□□□□□ -0.63
MSH6-210ENST00000540021 CATR1Q13166 79 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 IQCJQ1A5X6 159 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 HIST3H2BBQ8N257 126 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 OR1P1Q8NH06 330 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 PINX1Q96BK5 328 aaKnown RBP11.14□□□□□ -0.63
MSH6-210ENST00000540021 RCC1LQ96I51 464 aaKnown RBP11.14□□□□□ -0.63
MSH6-210ENST00000540021 ENY2Q9NPA8 101 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 ABI3Q9P2A4 366 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 VCANP13611 3396 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 DOCK10Q96BY6 2186 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 IGHV3-43A0A0B4J1X8 118 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 LOC102723971A0A1B0GUV8 181 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 CEACAM18A8MTB9 384 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 IGHV3-43DP0DP04 118 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 CCL1P22362 96 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 COL10A1Q03692 680 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 LYPD6Q86Y78 171 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 APH1AQ96BI3 265 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 LRRC3CA6NJW4 275 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 PPP1CBP62140 327 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 HGFACQ04756 655 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 IL15RAQ13261 267 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 IGFBP7Q16270 282 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 PLEKHA3Q9HB20 300 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 OR1A1Q9P1Q5 309 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 OR2W1Q9Y3N9 320 aa11.14□□□□□ -0.63
MSH6-210ENST00000540021 C17orf112F2Z3M2 114 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 MBP02144 154 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 CST2P09228 141 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 G6PCP35575 357 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 MEF2BQ02080 365 aaPredicted RBP11.13□□□□□ -0.63
MSH6-210ENST00000540021 ZNF573Q86YE8 665 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 C14orf144Q96I85 54 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 GNG12Q9UBI6 72 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 A0A1W2PR77 199 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 SLC31A2O15432 143 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 KRTDAPP60985 99 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 RPL19P84098 196 aaKnown RBP11.13□□□□□ -0.63
MSH6-210ENST00000540021 C3AR1Q16581 482 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 OR4D5Q8NGN0 318 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 FAM131CQ96AQ9 280 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 HIST1H2BLQ99880 126 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 PARD6AQ9NPB6 346 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 GPR179Q6PRD1 2367 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 RNF212BA8MTL3 300 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 CA11O75493 328 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 DEFA4P12838 97 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 HIST1H3AP68431 136 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 MRPL49Q13405 166 aaKnown RBP11.13□□□□□ -0.63
MSH6-210ENST00000540021 DBX2Q6ZNG2 339 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 NFAM1Q8NET5 270 aaPredicted RBP11.13□□□□□ -0.63
MSH6-210ENST00000540021 IFI44Q8TCB0 444 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 ZNF576Q9H609 170 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 GPR35Q9HC97 309 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 FKBP11Q9NYL4 201 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 TP53TG5Q9Y2B4 290 aa11.13□□□□□ -0.63
MSH6-210ENST00000540021 C11orf94C9JXX5 98 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 F6UZH7 168 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 SLC10A1Q14973 349 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 OR4X1Q8NH49 305 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 DDA1Q9BW61 102 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 PAM16Q9Y3D7 125 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 TRAV34A0A0B4J273 112 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 IGHV5-10-1A0A0J9YXX1 117 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 GYPAP02724 150 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 SRFP11831 508 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 NTF3P20783 257 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 ARG2P78540 354 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 P2RY6Q15077 328 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 OR2D2Q9H210 308 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 BOKQ9UMX3 212 aaPredicted RBP11.12□□□□□ -0.63
MSH6-210ENST00000540021 A8MXE2 369 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 NGFP01138 241 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 FOXO1Q12778 655 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 OR8B8Q15620 311 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 SPSB3Q6PJ21 355 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 WDR74Q6RFH5 385 aaPredicted RBP11.12□□□□□ -0.63
MSH6-210ENST00000540021 FGFBP3Q8TAT2 258 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 APOBEC3DQ96AK3 386 aaPredicted RBP11.12□□□□□ -0.63
MSH6-210ENST00000540021 MISP3Q96FF7 219 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 ELOVL1Q9BW60 279 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 EGLN1Q9GZT9 426 aa11.12□□□□□ -0.63
MSH6-210ENST00000540021 PI4KAP42356 2102 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 COL19A1Q14993 1142 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 SPINK14Q6IE38 97 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 NEIL1Q96FI4 390 aaPredicted RBP11.11□□□□□ -0.63
MSH6-210ENST00000540021 WNT5BQ9H1J7 359 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 TMEM9BQ9NQ34 198 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 CHCHD2Q9Y6H1 151 aaPredicted RBP11.11□□□□□ -0.63
MSH6-210ENST00000540021 OR3A1P47881 315 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms