RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR2B11Q5JQS5 317 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 Q6ZR03 302 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 C9orf106Q8NAJ2 232 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 OR10V1Q8NGI7 309 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 BCL2L14Q9BZR8 327 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 RPS10P5Q9NQ39 176 aa16.13■□□□□ 0.17
VIM-203ENST00000469543 H0Y980 276 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 MLNRO43193 412 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 FBP1P09467 338 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 ERVK11-1P61568 191 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 ZNF880Q6PDB4 577 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 OR5D13Q8NGL4 314 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 POM121Q96HA1 1249 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 PKIBQ9C010 78 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 OPA3Q9H6K4 179 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 ZFP57Q9NU63 452 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 FTH1P19P0C7X4 201 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 KIR2DL2P43627 348 aaPredicted RBP16.12■□□□□ 0.17
VIM-203ENST00000469543 CEBPGP53567 150 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 AESQ08117 197 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 ZNF497Q6ZNH5 498 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 RNASE11Q8TAA1 199 aaKnown RBP16.12■□□□□ 0.17
VIM-203ENST00000469543 CLCF1Q9UBD9 225 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 PRSS44E7EML9 344 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 IAPPP10997 89 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 PRAMEF6Q5VXH4 476 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 AIFM2Q9BRQ8 373 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 RIMS4Q9H426 269 aaPredicted RBP16.12■□□□□ 0.17
VIM-203ENST00000469543 CACNG5Q9UF02 275 aa16.12■□□□□ 0.17
VIM-203ENST00000469543 KIAA1324LA8MWY0 1029 aaPredicted RBP16.11■□□□□ 0.17
VIM-203ENST00000469543 K7N7A8 449 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 TXNL1O43396 289 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 LRP5LA4QPB2 252 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 IGKV1-5P01602 117 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 TGFBR3Q03167 851 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 ZNF585BQ52M93 769 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 CD300LFQ8TDQ1 290 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 SPIN2AQ99865 258 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 SPIN2BQ9BPZ2 258 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 NDRG3Q9UGV2 375 aa16.11■□□□□ 0.17
VIM-203ENST00000469543 PCNX1Q96RV3 2341 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 PLCE1Q9P212 2302 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 COLCA2A8K830 154 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 M0R036 132 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 PGA5P0DJD9 388 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 OR8G1Q15617 311 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 AWAT1Q58HT5 328 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 OR1L1Q8NH94 360 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 GTF3AQ92664 365 aaKnown RBP16.1■□□□□ 0.17
VIM-203ENST00000469543 C14orf79Q96F83 325 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 PLPPR2Q96GM1 343 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 METRNQ9UJH8 293 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 CLEC18AA5D8T8 446 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 RAMP3O60896 148 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 HAGHQ16775 308 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 Q6ZT83 130 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 C11orf53Q8IXP5 236 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 CLEC18CQ8NCF0 446 aa16.1■□□□□ 0.17
VIM-203ENST00000469543 CHD3Q12873 2000 aaKnown RBP16.09■□□□□ 0.17
VIM-203ENST00000469543 TRBV6-6A0A0A6YYG2 114 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 ARG1P05089 322 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 LINC00596Q86U02 117 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 ASCL3Q9NQ33 180 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 A6NLC8 198 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.09■□□□□ 0.17
VIM-203ENST00000469543 PITX3O75364 302 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 LMO1P25800 156 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 RPL35P42766 123 aaKnown RBP16.09■□□□□ 0.17
VIM-203ENST00000469543 ARL16Q0P5N6 197 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 MRPL49Q13405 166 aaKnown RBP16.09■□□□□ 0.17
VIM-203ENST00000469543 ZNF266Q14584 549 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 DEFB109BQ30KR1 87 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 WDR31Q8NA23 367 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 OR52L2PQ8NGH6 319 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 CABLES2Q9BTV7 478 aa16.09■□□□□ 0.17
VIM-203ENST00000469543 C7orf77A4D0Y5 90 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 UMAD1C9J7I0 102 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 HEXAP06865 529 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 METTL15P1P0C7V9 234 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 OR3A1P47881 315 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 AKR1D1P51857 326 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 SPSB3Q6PJ21 355 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 ZNF808Q8N4W9 903 aaPredicted RBP16.08■□□□□ 0.16
VIM-203ENST00000469543 DRAM1Q8N682 238 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 RFESDQ8TAC1 157 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 OPN3Q9H1Y3 402 aaPredicted RBP16.08■□□□□ 0.16
VIM-203ENST00000469543 PCP4L1A6NKN8 68 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 HAND1O96004 215 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 SFT2D1Q8WV19 159 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 RBMXL1Q96E39 390 aaKnown RBP16.08■□□□□ 0.16
VIM-203ENST00000469543 TAAR6Q96RI8 345 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 DCTN5Q9BTE1 182 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 RSG1Q9BU20 258 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 CEP295Q9C0D2 2601 aa16.08■□□□□ 0.16
VIM-203ENST00000469543 ACACAQ13085 2346 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 SH2D1BO14796 132 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 RAC2P15153 192 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 ZNF146Q15072 292 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 THNSL2Q86YJ6 484 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 ZNF610Q8N9Z0 462 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms