RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 C20orf202A1L168 122 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 IGSF23A1L1A6 192 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 BTNL3Q6UXE8 466 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 LRRC75AQ8NAA5 344 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 PHF7Q9BWX1 381 aaPredicted RBP11.74□□□□□ -0.53
USP42-206ENST00000479544 FABP6P51161 128 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 SNAI3Q3KNW1 292 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 FDX2Q6P4F2 183 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 SLC22A18ASQ8N1D0 253 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.74□□□□□ -0.53
USP42-206ENST00000479544 DUXBA0A1W2PPF3 345 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 PRDX4Q13162 271 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 NUFIP2Q7Z417 695 aaKnown RBP11.74□□□□□ -0.53
USP42-206ENST00000479544 SSMEM1Q8WWF3 244 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 RBKSQ9H477 322 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 LIN7CQ9NUP9 197 aaKnown RBP11.74□□□□□ -0.53
USP42-206ENST00000479544 ZNF319Q9P2F9 582 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 LMO7DNF2Z398 122 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 HIST1H1BP16401 226 aaKnown RBP11.73□□□□□ -0.53
USP42-206ENST00000479544 SUPT4H1P63272 117 aaKnown RBP11.73□□□□□ -0.53
USP42-206ENST00000479544 TIGITQ495A1 244 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 CYB5R3P00387 301 aaPredicted RBP11.73□□□□□ -0.53
USP42-206ENST00000479544 HOXB1P14653 301 aaPredicted RBP11.73□□□□□ -0.53
USP42-206ENST00000479544 GCNT2Q8N0V5 402 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 DEFB108BQ8NET1 73 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 DTD1Q8TEA8 209 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 HSPB9Q9BQS6 159 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 CD5P06127 495 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 BCL3P20749 454 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 IER3P46695 156 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 GLIPR1P48060 266 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 PLAURQ03405 335 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 TMEM183BQ1AE95 376 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 MRGPRGQ86SM5 289 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 WFDC1Q9HC57 220 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 TMEM9BQ9NQ34 198 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 SLC35D1Q9NTN3 355 aa11.73□□□□□ -0.53
USP42-206ENST00000479544 IGHV1OR21-1A0A087WYE8 117 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 LRP5LA4QPB2 252 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 SOD3P08294 240 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 CDC34P49427 236 aaPredicted RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 MISP3Q96FF7 219 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 SCARF2Q96GP6 870 aaPredicted RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 BARX1Q9HBU1 254 aaPredicted RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 CLN8Q9UBY8 286 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 A0A0A6YYD4 124 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 GYPAP02724 150 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 NPBWR2P48146 333 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 MRPL54Q6P161 138 aaKnown RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 C5orf24Q7Z6I8 188 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 ST6GALNAC3Q8NDV1 305 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 C2CD4DB7Z1M9 353 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 ST8SIA5O15466 376 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 ZNF253O75346 499 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 HSPB1P04792 205 aaKnown RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 HOXC4P09017 264 aaPredicted RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 SRP19P09132 144 aaKnown RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 CAMPP49913 170 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 RPP30P78346 268 aaKnown RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 KIAA1644Q3SXP7 199 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 LYSMD4Q5XG99 296 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 B4DEV8 164 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 M0R296 226 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 MELTFP08582 738 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 CNN1P51911 297 aaKnown RBP11.72□□□□□ -0.53
USP42-206ENST00000479544 TMEM187Q14656 261 aa11.72□□□□□ -0.53
USP42-206ENST00000479544 LILRA5A6NI73 299 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 TSPAN2O60636 221 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 RPLP1P05386 114 aaKnown RBP11.71□□□□□ -0.53
USP42-206ENST00000479544 IGFBP3P17936 291 aaPredicted RBP11.71□□□□□ -0.53
USP42-206ENST00000479544 CD33P20138 364 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 GCH1P30793 250 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 ERVFRD-1P60508 538 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 EIF3IQ13347 325 aaKnown RBP11.71□□□□□ -0.53
USP42-206ENST00000479544 RAB35Q15286 201 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 ANKRD37Q7Z713 158 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 SLC35E3Q7Z769 313 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 ZNF596Q8TC21 504 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 APH1AQ96BI3 265 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 RASL10BQ96S79 203 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 TINAGQ9UJW2 476 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 PIEZO1Q92508 2521 aa11.71□□□□□ -0.53
USP42-206ENST00000479544 TOX4O94842 621 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 NDUFB4O95168 129 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 CELA2AP08217 269 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 AGAP20933 346 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 SUMO3P55854 103 aaPredicted RBP11.71□□□□□ -0.54
USP42-206ENST00000479544 C11orf42Q8N5U0 333 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 DAZAP1Q96EP5 407 aaKnown RBP11.71□□□□□ -0.54
USP42-206ENST00000479544 OR4C12Q96R67 309 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 LRRC3CA6NJW4 275 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 TIMM8AO60220 97 aaPredicted RBP11.71□□□□□ -0.54
USP42-206ENST00000479544 MEF2BQ02080 365 aaPredicted RBP11.71□□□□□ -0.54
USP42-206ENST00000479544 COL10A1Q03692 680 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 MST1LQ2TV78 715 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 DMRTA1Q5VZB9 504 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 ATOH7Q8N100 152 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 NANOS1Q8WY41 292 aaKnown RBP11.71□□□□□ -0.54
USP42-206ENST00000479544 ADIPOR1Q96A54 375 aa11.71□□□□□ -0.54
USP42-206ENST00000479544 EPOPA6NHQ4 379 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms