RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PRKACAP17612 351 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 BCL3P20749 454 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SLC6A6P31641 620 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SSTR5P35346 364 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ASIPP42127 132 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 GLP1RP43220 463 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SLC15A1P46059 708 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 MAP2K3P46734 347 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 PCP4P48539 62 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 IDH3AP50213 366 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 KRTAP10-1P60331 282 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SSBP2P81877 361 aaPredicted RBP3.45□□□□□ -1.86
USP4-209ENST00000475873 LSAMPQ13449 338 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ATXN7L3Q14CW9 347 aaPredicted RBP3.45□□□□□ -1.86
USP4-209ENST00000475873 ODF3L2Q3SX64 289 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CYBRD1Q53TN4 286 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ACTBL2Q562R1 376 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ZNF684Q5T5D7 378 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SLX4IPQ5VYV7 408 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ZNF343Q6P1L6 599 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 Q6ZSN1 163 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CDH26Q8IXH8 852 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 OR52B4Q8NGK2 314 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 OR11H2Q8NH07 326 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 OR10A6Q8NH74 314 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 RDH12Q96NR8 316 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CLUHP3Q96NS8 147 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 TEAD3Q99594 435 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 FUZQ9BT04 418 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 NMNAT2Q9BZQ4 307 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 OR52D1Q9H346 318 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 HRH4Q9H3N8 390 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CCDC134Q9H6E4 229 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 MAP6D1Q9H9H5 199 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 RHBDL2Q9NX52 303 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 IDI2-AS1Q9NZ38 188 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CD300AQ9UGN4 299 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 MLXQ9UH92 298 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 UBQLN2Q9UHD9 624 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 ENPP5Q9UJA9 477 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CELA1Q9UNI1 258 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 CORO2BQ9UQ03 480 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 DNAH8Q96JB1 4490 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 A0A0U1RQV5 110 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 LOC105371267A0A1B0GV96 52 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 UNC119BA6NIH7 251 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PRR32B1ATL7 298 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 UBDO15205 165 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 ZSCAN12O43309 604 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 ATP5HO75947 161 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 IFNA10P01566 189 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 CSN2P05814 226 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 ANXA8P13928 327 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PTBP1P26599 531 aaKnown RBP eCLIP3.44□□□□□ -1.86
USP4-209ENST00000475873 NUP62P37198 522 aaPredicted RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 HSPA13P48723 471 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 MRPL19P49406 292 aaKnown RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 ZNF137PP52743 207 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PSMA6P60900 246 aaKnown RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 ADARB1P78563 741 aaKnown RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 RIPPLY1Q0D2K3 151 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 RPEL1Q2QD12 228 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PYHIN1Q6K0P9 492 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 Q6P435 159 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 UNQ5815/PRO19632Q6UWF5 114 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 SLC25A26Q70HW3 274 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PPP1R27Q86WC6 154 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 RDH10Q8IZV5 341 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 C6orf223Q8N319 242 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 LINC00311Q8N616 119 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 TCTEX1D1Q8N7M0 179 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 EIF1ADQ8N9N8 165 aaKnown RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 SLC37A3Q8NCC5 494 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 LFNGQ8NES3 379 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 FANK1Q8TC84 345 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 OR51E1Q8TCB6 317 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 DYNLRB2Q8TF09 96 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 RASSF5Q8WWW0 418 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 C9orf16Q9BUW7 83 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 FNDC11Q9BVV2 318 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 FBXL15Q9H469 300 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 IFT22Q9H7X7 185 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 GPR84Q9NQS5 396 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 KRT84Q9NSB2 600 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 FAM206AQ9NX38 181 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 PEF1Q9UBV8 284 aaKnown RBP3.44□□□□□ -1.86
USP4-209ENST00000475873 KIF25Q9UIL4 384 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 DMRT1Q9Y5R6 373 aa3.44□□□□□ -1.86
USP4-209ENST00000475873 ELOA3CA0A087WX78 387 aaPredicted RBP3.43□□□□□ -1.86
USP4-209ENST00000475873 IGKV1-12A0A0C4DH73 117 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 TRBV2A0A0J9YWF9 115 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 A0A1B0GTI1 187 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 C13orf42A0A1B0GVH6 325 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 TMEM213A2RRL7 107 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 FAM220BPB1ANY3 271 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 SLC33A1O00400 549 aaPredicted RBP3.43□□□□□ -1.86
USP4-209ENST00000475873 NBR2O15453 112 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 CIDEAO60543 219 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 IGKV1D-12P01611 117 aa3.43□□□□□ -1.86
USP4-209ENST00000475873 HLA-AP01891 365 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms