RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TGIF2LXQ8IUE1 241 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 TMEFF1Q8IYR6 380 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 LEPROTL1O95214 131 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 CCSMST1Q4G0I0 132 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 MED29Q9NX70 200 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 TUBD1Q9UJT1 453 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM250H0YL14 139 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 PLPP3O14495 311 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 CDK2AP1O14519 115 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 CHST1O43916 411 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 AMY1AP04745 511 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 IER3P46695 156 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 TCRBV16S1A1N1A0A5B0 115 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 OR4A8P0C604 315 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 FSTP19883 344 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 HCFC1P51610 2035 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 R3HDM4Q96D70 268 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 NPVFQ9HCQ7 196 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 ETHE1O95571 254 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 WNT3P56703 355 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL6A3-202ENST00000347401 AGERQ15109 404 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 PSG5Q15238 335 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 STPG3Q8N7X2 389 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 WDR31Q8NA23 367 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 OR8A1Q8NGG7 326 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 OR2I1PQ8NGU4 316 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 CXXC4Q9H2H0 198 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM262E9PQX1 116 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 NRG2O14511 850 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-202ENST00000347401 HLA-DQB1P01920 261 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 OR1L8Q8NGR8 309 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 ISOC2Q96AB3 205 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF775Q96BV0 537 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-202ENST00000347401 TRAV38-1A0A0B4J264 116 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 A0A1B0GW15 77 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 NMBP08949 121 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 TGIF2LYQ8IUE0 185 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 Q8WTZ3 238 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FCGR3BO75015 233 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FGF8P55075 233 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF750Q32MQ0 723 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 MOB3BQ86TA1 216 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 CYB561D1Q8N8Q1 229 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 SYT8Q8NBV8 401 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 GPR27Q9NS67 375 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 CISD1Q9NZ45 108 aaKnown RBP11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A10PA6NDY2 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A18PA6NE21 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A16PA6NEW6 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A20PA6NIJ5 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A8PA6NJQ4 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A7PA6NKC0 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A22PA8MWA6 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A12PA8MX19 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A5PA8MXJ8 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A23PA8MXZ1 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A15PP0C7V4 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A13PP0C7W8 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A14PP0C7W9 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM90A24PP0C7X0 464 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 ETFBKMTQ8IXQ9 262 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 SIT1Q9Y3P8 196 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 PLXNA2O75051 1894 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 UBR3Q6ZT12 1888 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 K7EQS6 105 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 DNASE2O00115 360 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-202ENST00000347401 FAM157CP0CG43 387 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 CEACAM16Q2WEN9 425 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 NPTNQ9Y639 398 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 WNK1Q9H4A3 2382 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 RIPPLY2Q5TAB7 128 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM30AQ9NV96 361 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 GLI3P10071 1580 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 CD1BP29016 333 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 GLIPR1P48060 266 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 LINC01559Q495D7 138 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 LYG1Q8N1E2 194 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 ASB5Q8WWX0 329 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 TRPM7Q96QT4 1865 aa11.74□□□□□ -0.53
COL6A3-202ENST00000347401 OR3A4PP47883 348 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF385CQ66K41 422 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-202ENST00000347401 ASPDHA6ND91 283 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 ID1P41134 155 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 HOGA1Q86XE5 327 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 ZCCHC14Q8WYQ9 949 aaKnown RBP11.73□□□□□ -0.53
COL6A3-202ENST00000347401 NPIPB6E9PJ23 425 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 MFAP2P55001 183 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 ASB10Q8WXI3 467 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 RND1Q92730 232 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 SIGLEC5O15389 551 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 CCDC144NLQ6NUI1 221 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 HIST1H4GQ99525 98 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 RNF122Q9H9V4 155 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 KCNK7Q9Y2U2 307 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 VWA8A3KMH1 1905 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 A0A087WWC5 75 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 C17orf47Q8NEP4 570 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 HSPB9Q9BQS6 159 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms