RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 CHST4Q8NCG5 386 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 TNFRSF14Q92956 283 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 ARHGAP5-AS1Q96IT6 56 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 P2RX4Q99571 388 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 TM2D1Q9BX74 207 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 VSIRQ9H7M9 311 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.8□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM14AQ9Y6G1 99 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF780BQ9Y6R6 833 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 CACNA1CQ13936 2221 aa4.8□□□□□ -1.64
CSDE1-202ENST00000339438 ALPK2Q86TB3 2170 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 IGLV3-12A0A075B6K2 115 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 C9orf172C9J069 976 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 DDAH2O95865 285 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 HRASP01112 189 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 RAB11AP62491 216 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CD226Q15762 336 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 BATFQ16520 125 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ACOT6Q3I5F7 207 aaPredicted RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 SHISA6Q6ZSJ9 500 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ATG4DQ86TL0 474 aaPredicted RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR5AS1Q8N127 324 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR2D3Q8NGH3 330 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 MBD3L1Q8WWY6 194 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 RNF2Q99496 336 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ABHD6Q9BV23 337 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 LAMTOR2Q9Y2Q5 125 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 R4GMQ9 66 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CEP250Q9BV73 2442 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 MAP1LC3B2A6NCE7 125 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FAM24AA6NFZ4 105 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CDS2O95674 445 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CPMP14384 443 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ALDH3B1P43353 468 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 GALR1P47211 349 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CTXN1P60606 82 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FNDC7Q5VTL7 733 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FIGLAQ6QHK4 219 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 C20orf196Q8IYI0 205 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ZIC4Q8N9L1 334 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 NECAP1Q8NC96 275 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR2M7Q8NG81 312 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FOXN4Q96NZ1 517 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TECTBQ96PL2 329 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 MAP1LC3BQ9GZQ8 125 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 PCBD2Q9H0N5 130 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF665Q9H7R5 613 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 MKKSQ9NPJ1 570 aaPredicted RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 EHFQ9NZC4 300 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TRAV30A0A087WSZ9 112 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR6C6A6NF89 314 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 AHSA1O95433 338 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 SCGB1D2O95969 90 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 PAX9P55771 341 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 UBE2G2P60604 165 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 RANP62826 216 aaKnown RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 VAMP2P63027 116 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM183BQ1AE95 376 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 RNF151Q2KHN1 245 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 SP6Q3SY56 376 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ALG10Q5BKT4 473 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TRIM61Q5EBN2 209 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TOMM20LQ6UXN7 152 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 TCF24Q7RTU0 167 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 NUP54Q7Z3B4 507 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR2C3Q8N628 320 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 CDRT4Q8N9R6 151 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 OR5H2Q8NGV7 314 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 RERGQ96A58 199 aaPredicted RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 SCGB3A2Q96PL1 93 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 Q9N2K0 584 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 LYRM2Q9NU23 88 aaPredicted RBP4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FAM206AQ9NX38 181 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 ELOVL5Q9NYP7 299 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FBXL7Q9UJT9 491 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 FAM186AA6NE01 2351 aa4.79□□□□□ -1.64
CSDE1-202ENST00000339438 PIEZO2Q9H5I5 2752 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 LRRC3CA6NJW4 275 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 MLNRO43193 412 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TTRP02766 147 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 HPNP05981 417 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 IL3RAP26951 378 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 CAPZBP47756 277 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 EMP2P54851 167 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 SNU13P55769 128 aaKnown RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 C1orf189Q5VU69 101 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 Q6ZPA2 131 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM123Q8N131 208 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 SLC22A24Q8N4F4 322 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 KCNG3Q8TAE7 436 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 IL22RA2Q969J5 263 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TBL1XR1Q9BZK7 514 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 ZNF160Q9HCG1 818 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 SH2D2AQ9NP31 389 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 MANBALQ9NQG1 85 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 MCTS1Q9ULC4 181 aaKnown RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 HHLA2Q9UM44 414 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 EMC9Q9Y3B6 208 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TACC2O95359 2948 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 VSTM2BA6NLU5 285 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms